... | ... | @@ -13,15 +13,10 @@ To run Peak Strainer with custom settings go to the *utils* folder and |
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run `msps.py -h` to display a list of available flags and options.
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Because of the complexity of the options from the command line,
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we recommend that you change the code in `peakStrainer.py`
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in the main method and update it there,
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the code should be readable and you can change it to your setting.
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we recommend to customize the code in `peakStrainer.py` instead of settings all the flags from the command line version.
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## Options
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PeakStrainer can be configured to run in different ways,
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but the default setting should work most of the time.
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Just in case here are some options you can change.
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To review the source code we recoment to start in the main method of the `peakStrainer.py` module.
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The code should be readable and you can change it to your setting.
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**Please note that some options are not available in the GUI.
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one of the goals of the GUI is to maintain simplicity.
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