.gitignore

# temporary files
.ipynb_checkpoints/
.DS_STORE
*pycache* 

# do not track results of examples (except for the examples of two cores and amnioserosa that are shown in the README.md)
# but do include the raw data for each of them
/examples/ZebrafishOpticalCup/*
!/examples/ZebrafishOpticalCup/exampleData-ZebrafishOpticalCup.jpg
/examples/Cake/*
!/examples/Cake/exampleData-Cake.jpg

# code fragments
*alternative*
# internal stuff
projectId.sh 
*internal*