run.sh

#! /bin/bash

# Make a directory in /tmp/OpenFPM_pdata

workspace=$1
hostname=$(cat hostname)
nproc=$3
ntask_per_node=$5
nodes=$4
branch=$6

if [ x"$branch" == x"" ]; then
  branch=$(git ls-remote --heads origin | grep $(git rev-parse HEAD) | cut -d / -f 3)
fi

echo "Directory: workspace"
echo "Machine: $hostname"
echo "Num of processors: $nproc"
echo "Branch: $branch"

if [ x"$hostname" == x"cifarm-mac-node.mpi-cbg.de"  -o x"$hostname" == x"suitcase"  ]; then
        mpi_options="--oversubscribe"
fi

if [ x"$hostname" == x"cifarm-ubuntu-node.mpi-cbg.de"  ]; then
        mpi_options="--mca btl self,vader"
fi

if [ x"$hostname" == x"cifarm-centos-node"  ]; then
        mpi_options="--allow-run-as-root"
fi

echo "Running general machine"
if [ x"$hostname" == x"no_test" ]; then
   exit 0;
fi

ls openfpm_dependencies
cp openfpm_dependencies/$branch/openfpm_vars_$branch $HOME/openfpm_vars_$branch
source $HOME/openfpm_vars_$branch

echo "RUNNING pdata $nproc with $mpi_options"
ls -la ./build/src/pdata
head -c 20 ./build/src/pdata
mpirun $mpi_options -np $nproc ./build/src/pdata
if [ $? -ne 0 ]; then
   exit 1 ;
fi