Latest version

.gitmodules

 [submodule "openfpm_vcluster"]
 	path = openfpm_vcluster
-	url = ssh://git@ppmcore.mpi-cbg.de/incardon/openfpm_vcluster.git
+	url = ssh://git@git.mpi-cbg.de/openfpm/openfpm_vcluster.git
 [submodule "openfpm_devices"]
 	path = openfpm_devices
-	url = ssh://git@ppmcore.mpi-cbg.de/incardon/openfpm_devices.git
+	url = ssh://git@git.mpi-cbg.de/openfpm/openfpm_devices.git
 [submodule "openfpm_io"]
 	path = openfpm_io
-	url = ssh://git@ppmcore.mpi-cbg.de/incardon/openfpm_io.git
+	url = ssh://git@git.mpi-cbg.de/openfpm/openfpm_io.git
 [submodule "openfpm_data"]
 	path = openfpm_data
-	url = ssh://git@ppmcore.mpi-cbg.de/incardon/openfpm_data.git
+	url = ssh://git@git.mpi-cbg.de/openfpm/openfpm_data.git
 [submodule "openfpm_numerics"]
 	path = openfpm_numerics
-	url = ssh://git@ppmcore.mpi-cbg.de/incardon/openfpm_numerics.git
+	url = ssh://git@git.mpi-cbg.de/openfpm/openfpm_numerics.git

CHANGELOG.md

 # Change Log
 All notable changes to this project will be documented in this file.
 
-## [0.5.1] - Mid september
+## [0.6.0] - End October 2016
+
+### Added
+- Symmetric cell-list/verlet list
+- Multi-phase cell-list and Multi-phase cell-list
+- Added ghost_get that keep properties
+- Examples: 1_ghost_get_put it show how to use ghost_get and put with the new options
+            4_multiphase_celllist_verlet completely rewritten for new Cell-list and multiphase verlet
+	    5_molecular_dynamic use case of symmetric cell-list and verlet list with ghost put
+	    6_complex_usage It show how the flexibility of openfpm can be used to debug your program
+- Plotting system can export graph in svg (to be included in the paper)
+
+ 
+### Fixed
+- Option NO_POSITION was untested
+- Regression: Examples code compilation was broken on OSX (Affect only 0.5.1)
+              (Internal: Added OSX examples compilarion/running test in the release pipeline)
+- gray_scott example code (variable not initialized)
+
+
+### Changes
+
+
+## [0.5.1] - 27 September 2016
 
 ### Added
 - ghost_put support for particles
-- Full-Support for complex property on vector-dist (Serialization) + example
+- Full-Support for complex property on vector_dist (Serialization)
+- Added examples for serialization of complex properties 4_Vector
+- improved speed of the iterators
 
 ### Fixed
 - Installation PETSC installation fail in case of preinstalled MPI
 - Miss-compilation of SUITESPARSE on gcc-6.2
 - vector_dist with negative domain (Now supported)
 - Grid 1D has been fixed
+- One constructor of Box had arguments inverted.
+  PLEASE CAREFULL ON THIS BUG
+     float xmin[] = {0.0,0.0};
+     float xmax[] = {1.0,1.0};
+     // Box<2,float> box(xmax,xmin)    BUG IT WAS xmax,xmin
+	 Box<2,float> box(xmin,xmax)  <--- NOW IT IS xmin,xmax
+	 Box<2,float> box({0.0,0.0},{1.0,1.0}) <---- This constructor is not affected by the BUG
 
 ### Changed
+- On gcc the -fext-numeric-literals compilation flag is now mandatory
 
 ## [0.5.0] - 15 August 2016
 
@@ -110,29 +143,26 @@ All notable changes to this project will be documented in this file.
 
 # Planned in the next Releases
 
+## [0.9.0] - Mid March
+
+- Algebraic Multigrid solver
+- Parallel VTK, improved visualization
+
 ## [0.8.0] - Mid January 2017
-## [0.7.0] - December 2016
 
 ### Added
 - Dynamic Load Balancies examples and interface fixation
 - Check Point restart
 - More example and documentations
 
-### Proposal
-
-- Algebraic Multigrid solver
-- Parallel VTK, improved visualization
-
-## [0.6.0] - Middle of October
+## [0.7.0] - December of October
 
 ### Added
+- Asynchronous communication
+- Support for Microsoft Windows with Cygwin
+- Support for Docker/codenvy
+- Defining a domain an invalid domain like Box<2,float> box({0.0,1.0},{0.0,1.0}) (the correct is {0.0,0.0},{1.0,1.0}  )
+           produce dead-lock or unclear error message in SE_CLASS1, not hint is given, added usefull error message
 
-- Symmetric Cell list and Verlet (15 days)
-- Semantic communication (??)
-- Improved Finite difference interface (15 days) 
-
-
-## [0.6.0] - Beginning of September
 
-- Complex properties and serialization interface (15 days)
 

Jenkins_high_scal_test

+#!groovy
+
+node ('taurus')
+{
+  deleteDir()
+  checkout scm
+  stage ('build_taurus')
+  {
+    sh "./build.sh $WORKSPACE $NODE_NAME pdata"
+  }
+
+  stage ('run_taurus')
+  {
+    parallel (
+      "24" : {sh "./run.sh $WORKSPACE $NODE_NAME 24 1 24"},
+      "48" : {sh "./run.sh $WORKSPACE $NODE_NAME 48 2 24"},
+      "96" : {sh "./run.sh $WORKSPACE $NODE_NAME 96 4 24"},
+      "192" : {sh "./run.sh $WORKSPACE $NODE_NAME 192 8 24"},
+      "240" : {sh "./run.sh $WORKSPACE $NODE_NAME 240 10 24"}
+    )
+  }
+}
+                 
+
+

Jenkins_med_scal_test

+#!groovy
+
+node ('gin')
+{
+  deleteDir()
+  checkout scm
+  stage ('build_gin')
+  {
+    sh "./build.sh $WORKSPACE $NODE_NAME pdata"
+  }
+
+  stage ('run_gin')
+  {
+    sh "./run.sh $WORKSPACE $NODE_NAME 5"
+    sh "./run.sh $WORKSPACE $NODE_NAME 6"
+    sh "./run.sh $WORKSPACE $NODE_NAME 7"
+    sh "./run.sh $WORKSPACE $NODE_NAME 8"
+    sh "./run.sh $WORKSPACE $NODE_NAME 9"
+    sh "./run.sh $WORKSPACE $NODE_NAME 10"
+    sh "./run.sh $WORKSPACE $NODE_NAME 11"
+  }
+}
+

Jenkinsfile

+#!groovy
+
+parallel (
+
+
+"nyu" : {node ('nyu')
+                  {
+                    deleteDir()
+                    checkout scm
+                    stage ('build_nyu')
+                    {
+                      sh "./build.sh $WORKSPACE $NODE_NAME pdata"
+                    }
+
+                    stage ('run_nyu')
+                    {
+                      parallel (
+                      "1" : {sh "./run.sh $WORKSPACE $NODE_NAME 1"},
+                      "2" : {sh "./run.sh $WORKSPACE $NODE_NAME 2"},
+                      "3" : {sh "./run.sh $WORKSPACE $NODE_NAME 3"})
+                      sh "./run.sh $WORKSPACE $NODE_NAME 5"
+                      sh "./success.sh 2 nyu opefpm_pdata"
+                    }
+                  }
+                 },
+
+
+
+
+"sb15" : {node ('sbalzarini-mac-15')
+                  {
+                    deleteDir()
+                    env.PATH = "/usr/local/bin:${env.PATH}"
+                    checkout scm
+                    stage ('build_sb15')
+                    {
+                      sh "./build.sh $WORKSPACE $NODE_NAME pdata"
+                    }
+
+                    stage ('run_sb15')
+                    {
+                      parallel (
+                      "1" : {sh "./run.sh $WORKSPACE $NODE_NAME 1"},
+                      "2" : {sh "./run.sh $WORKSPACE $NODE_NAME 2"},
+                      "3" : {sh "./run.sh $WORKSPACE $NODE_NAME 3"}
+                      )
+                      sh "./run.sh $WORKSPACE $NODE_NAME 4"
+                      sh "./run.sh $WORKSPACE $NODE_NAME 5"
+                      sh "./run.sh $WORKSPACE $NODE_NAME 6"
+                      sh "./run.sh $WORKSPACE $NODE_NAME 7"
+                      sh "./success.sh 2 sbalzarini-mac-15 opefpm_pdata"
+                    }
+                  }
+                 },
+
+
+"gin" : {node ('gin')
+                  {
+                    deleteDir()
+                    env.PATH = "/usr/local/bin:${env.PATH}"
+                    checkout scm
+                    stage ('build_gin')
+                    {
+                      sh "./build.sh $WORKSPACE $NODE_NAME pdata"
+                    }
+
+                    stage ('run_gin')
+                    {
+                      parallel (
+                      "p1" : {sh "./run.sh $WORKSPACE $NODE_NAME 1"},
+                      "p2" : {sh "./run.sh $WORKSPACE $NODE_NAME 2"},
+                      "p3" : {sh "./run.sh $WORKSPACE $NODE_NAME 3"},
+                      "p4" : {sh "./run.sh $WORKSPACE $NODE_NAME 5"}
+                      )
+                      sh "./success.sh 2 gin opefpm_pdata"
+                    }
+                  }
+                 }
+
+)
+

Jenkinsfile_examples_test

+#!groovy
+
+parallel (
+
+"gin" : {node ('gin')
+        {
+         deleteDir()
+         checkout scm
+         stage ('build_gin')
+         {
+          sh "./build.sh $WORKSPACE $NODE_NAME pdata full  && make install"
+         }
+
+         stage ('run_example_gin')
+         {
+          sh "source $HOME/openfpm_vars && cd example && make"
+         }
+       }},
+
+"sb15" : {node ('sbalzarini-mac-15')
+         {
+          deleteDir()
+          checkout scm
+          env.PATH = "/usr/local/bin:${env.PATH}"
+          stage ('build_sb15')
+          {
+           sh "./build.sh $WORKSPACE $NODE_NAME pdata full && make install"
+          }
+
+          stage ('run_example_sb15')
+          {
+           sh "source $HOME/openfpm_vars && cd example && make"
+	  }
+         }
+         }
+)
+

Jenkinsfile_numerics

+#!groovy
+
+parallel (
+
+
+"gin" : {node ('gin')
+                  {
+                    deleteDir()
+                    checkout scm
+                    stage ('build_gin')
+                    {
+                      sh "./build.sh $WORKSPACE $NODE_NAME numerics"
+                    }
+
+                    stage ('run_gin')
+                    {
+		      parallel (
+                      "1" : {sh "cd openfpm_numerics && ./run.sh $WORKSPACE $NODE_NAME 1"},
+                      "2" : {sh "cd openfpm_numerics && ./run.sh $WORKSPACE $NODE_NAME 2"},
+                      "3" : {sh "cd openfpm_numerics && ./run.sh $WORKSPACE $NODE_NAME 3"},
+                      "4" : {sh "cd openfpm_numerics && ./run.sh $WORKSPACE $NODE_NAME 4"}
+                      )
+                      sh "./success.sh 2 gin openfpm_numerics"
+                    }
+                  }
+                 },
+
+
+
+
+"sb15" : {node ('sbalzarini-mac-15')
+                  {
+                    deleteDir()
+                    env.PATH = "/usr/local/bin:${env.PATH}"
+                    checkout scm
+                    stage ('build_sb15')
+                    {
+                      sh "./build.sh $WORKSPACE $NODE_NAME numerics"
+                    }
+
+                    stage ('run_sb15')
+                    {
+                      parallel (
+                      "1" : {sh "cd openfpm_numerics && ./run.sh $WORKSPACE $NODE_NAME 1"},
+                      "2" : {sh "cd openfpm_numerics && ./run.sh $WORKSPACE $NODE_NAME 2"},
+                      "3" : {sh "cd openfpm_numerics && ./run.sh $WORKSPACE $NODE_NAME 3"},
+                      "4" : {sh "cd openfpm_numerics && ./run.sh $WORKSPACE $NODE_NAME 4"}
+                      )
+                      sh "./success.sh 2 sbalzarini-mac-15 openfpm_numerics"
+                    }
+                  }
+                 }
+
+)
+

Makefile.am

@@ -2,6 +2,27 @@ SUBDIRS = src images openfpm_data openfpm_io openfpm_devices openfpm_vcluster op
 
 bin_PROGRAMS =
 
+pdata:
+	cd src && make
+
+data:
+	cd openfpm_data/src && make
+
+devices:
+	cd openfpm_devices/src && make
+
+vcluster:
+	cd openfpm_vcluster/src && make
+
+io:
+	cd openfpm_io/src && make
+
+numerics:
+	cd openfpm_numerics/src && make
+
+
+
+
 test_pdata:
 	cd src && make test
 

build.sh

+#! /bin/bash
+
+# Make a directory in /tmp/OpenFPM_pdata
+
+echo "Directory: $1"
+echo "Machine: $2"
+
+mkdir src/config
+
+git submodule init
+if [ $? -ne 0 ]; then
+  echo -e "Configure\033[91;5;1m FAILED \033[0m"
+  exit 1
+fi
+
+git submodule update
+if [ $? -ne 0 ]; then
+  echo -e "Configure\033[91;5;1m FAILED \033[0m"
+  exit 1
+fi
+
+mkdir openfpm_numerics/src/config
+
+
+if [ "$2" == "gin" ]
+then
+ echo "Compiling on gin\n"
+ source ~/.bashrc
+ module load gcc/4.9.2
+ if [ x"$4" == x"full" ]; then
+  ./install -s -c "--prefix=/home/jenkins/openfpm_install"
+ elif [ x"$3" == x"numerics" ]; then
+  ./install -m -s -c "--prefix=/home/jenkins/openfpm_install"
+  make $3
+ else
+  ./install -m -s -c "--prefix=/home/jenkins/openfpm_install --no-recursion"
+  make $3
+ fi
+ if [ $? -ne 0 ]; then
+   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
+   exit 1 ;
+ fi
+
+ source $HOME/openfpm_vars
+
+ if [ $? -ne 0 ]; then
+   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
+   exit 1 ; 
+ fi
+
+elif [ "$2" == "wetcluster" ]
+then
+ echo "Compiling on wetcluster"
+
+## produce the module path
+
+ source ~/.bashrc
+ module load gcc/4.9.2
+ module load openmpi/1.8.1
+ module load boost/1.54.0
+
+ sh ./autogen.sh
+ ./install -m -s -c "--with-boost=/sw/apps/boost/1.54.0/ CXX=mpic++ --no-recursion"
+ make $3
+
+ if [ $? -ne 0 ]; then
+   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
+   exit 1 ;
+ fi
+
+elif [ "$2" == "taurus" ]
+then
+ echo "Compiling on taurus"
+
+ source /etc/profile
+ echo "$PATH"
+ module load eigen/3.2.0
+ module load suitesparse/4.2.1-gnu-multimkl
+ module load boost/1.60.0
+ module load gcc/5.3.0
+ module load openmpi/1.10.2-gnu
+ module unload bullxmpi
+ 
+ export LD_LIBRARY_PATH="$LD_LIBRARY_PATH:/home/incard/PARMETIS/lib:/home/incard/METIS/lib:/home/incard/HDF5/lib"
+
+ ./install -m -i "/scratch/p_ppm/" -s -c"CXX=mpic++ --no-recursion"
+ make $3
+
+ source $HOME/openfpm_vars
+
+ if [ $? -ne 0 ]; then
+   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
+   exit 1 ; 
+ fi
+else
+ echo "Compiling general"
+ source ~/.bashrc
+
+ if [ x"$4" == x"full" ]; then
+  ./install -s -c "--prefix=/Users/jenkins/openfpm_install"
+ elif [ x"$3" == x"numerics" ]; then
+  ./install -m -s -c "--prefix=/home/jenkins/openfpm_install"
+  make $3
+ else
+  ./install -m -s -c "--prefix=/Users/jenkins/openfpm_install --no-recursion"
+  make $3
+ fi
+
+ if [ $? -ne 0 ]; then
+   curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
+   exit 1 ;
+ fi
+
+fi
+
+

build_pdata.sh

@@ -213,12 +213,12 @@ then
  export
  which salloc
 
- salloc --nodes=1 --ntasks-per-node=24 --time=00:10:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 24 src/pdata --report_level=no"
+ salloc --nodes=1 --ntasks-per-node=24 --time=00:15:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 24 src/pdata --report_level=no"
  if [ $? -ne 0 ]; then
    curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
    exit 1 ; 
  fi
- salloc --nodes=2 --ntasks-per-node=24 --time=00:10:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 48 src/pdata --report_level=no"
+ salloc --nodes=2 --ntasks-per-node=24 --time=00:15:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 48 src/pdata --report_level=no"
  if [ $? -ne 0 ]; then
    curl -X POST --data "payload={\"icon_emoji\": \":jenkins:\", \"username\": \"jenkins\"  , \"attachments\":[{ \"title\":\"Error:\", \"color\": \"#FF0000\", \"text\":\"$2 failed to complete the openfpm_pdata test \" }] }" https://hooks.slack.com/services/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
    exit 1 ; 

configure.ac

@@ -143,9 +143,21 @@ AX_LIB_PETSC()
 
 ## Check for quadmath
 
-AC_CHECK_LIB(quadmath, sinq, [AC_DEFINE(HAVE_LIBQUADMATH,[],[Have quad math lib])
-                                LIBQUADMATH=" -lquadmath "
-                                ], [])
+
+have_quad_lib=no
+have_quad_head=no
+AC_CHECK_LIB(quadmath, sinq, [have_quad_lib=yes], [])
+AC_CHECK_HEADER(quadmath.h,[have_quad_head=yes],[])
+
+if [x"have_quad_math" == x"yes" $&& x"have_quad_math" == x"yes" ]; then
+    AC_DEFINE(HAVE_LIBQUADMATH,[],[Have quad math lib])
+    LIBQUADMATH=" -lquadmath "
+fi
+
+AC_SUBST(OPENMP_CFLAGS)
+AC_SUBST(OPENMP_LDFLAGS)
+
+echo "$OPENMP_CFLAGS" > openmp_flags
 
 ########
 
@@ -167,6 +179,28 @@ if test x"$scancoverty" = x"yes"; then
 fi
 
 
+###### Checking for compiler flags -fext-numeric-literals
+
+AC_LANG_PUSH([C++])
+
+my_save_cflags="$CXXFLAGS"
+CXXFLAGS=-fext-numeric-literals
+AC_MSG_CHECKING([whether CXX supports -fext-numeric-literals])
+AC_COMPILE_IFELSE([AC_LANG_PROGRAM([])],
+    [AC_MSG_RESULT([yes])
+     AM_CXXFLAGS="-fext-numeric-literals"
+     echo "-fext-numeric-literals" > openfpm_flags
+    ],
+    [
+     AC_MSG_RESULT([no])
+     echo "" > openfpm_flags
+    ]
+)
+AC_LANG_POP([C++])
+CXXFLAGS="$my_save_cflags"
+AC_SUBST([AM_CXXFLAGS])
+
+
 ## Check for parMetis
 
 IMMDX_LIB_PARMETIS([],[echo "Cannot detect parmetis, use the --with-parmetis option if it is not installed in the default location"

example/Grid/0_simple/Makefile

@@ -15,7 +15,7 @@ grid: $(OBJ)
 all: grid
 
 run: all
-	source $$HOME/openfpm_vars; mpirun -np 2 ./grid
+	mpirun -np 2 ./grid
 
 .PHONY: clean all run
 

example/Grid/1_stencil/Makefile

@@ -15,7 +15,7 @@ stencil: $(OBJ)
 all: stencil
 
 run: all
-	source $$HOME/openfpm_vars; mpirun -np 3 ./stencil
+	mpirun -np 3 ./stencil
 
 .PHONY: clean all run
 

example/Grid/2_solve_eq/Makefile

@@ -15,7 +15,7 @@ periodic: $(OBJ)
 all: periodic
 
 run: all
-	source $$HOME/openfpm_vars; mpirun -np 4 ./periodic
+	mpirun -np 4 ./periodic
 
 .PHONY: clean all run
 

example/Grid/3_gray_scott/Makefile

@@ -15,7 +15,7 @@ gray_scott: $(OBJ)
 all: gray_scott
 
 run: all
-	source $$HOME/openfpm_vars; mpirun -np 4 ./gray_scott
+	mpirun -np 4 ./gray_scott
 
 .PHONY: clean all run
 

example/Grid/3_gray_scott/main.cpp

@@ -261,7 +261,7 @@ int main(int argc, char* argv[])
 	//! \cond [time stepping] \endcond
 
 	// sync the ghost
-	size_t count;
+	size_t count = 0;
 	Old.template ghost_get<U,V>();
 
 	// because we assume that spacing[x] == spacing[y] we use formula 2

example/Numerics/PSE/0_Derivative_approx_1D/Makefile

@@ -15,7 +15,7 @@ pse_1d: $(OBJ)
 all: pse_1d
 
 run: all
-	source $$HOME/openfpm_vars; ./pse_1d
+	./pse_1d
 
 .PHONY: clean all run
 

example/Numerics/PSE/1_Derivative_approx_1D_mp/Makefile

+# This example does not work using clang
+# Eliminate the comment to activate it
+
 include ../../../example.mk
 
 CC=mpic++
@@ -7,17 +10,17 @@ LDIR =
 OBJ_128 = main_float128.o
 
 %.o: %.cpp
-	$(CC) -O3 -c -fext-numeric-literals --std=c++11 -o $@ $< $(INCLUDE_PATH)
+	$(CC) -O3 -c --std=c++11 -o $@ $< $(INCLUDE_PATH)
 
-pse_1d_128: $(OBJ_128)
-	$(CC) -o $@ $^ $(CFLAGS) $(LIBS_PATH) $(LIBS) -lquadmath
+# pse_1d_128: $(OBJ_128)
+# 	$(CC) -o $@ $^ $(CFLAGS) $(LIBS_PATH) $(LIBS) -lquadmath
 
-all: pse_1d_128
+#all: pse_1d_128
 
-run: all
-	source $$HOME/openfpm_vars; ./pse_1d_128
+run: #all
+#	source $$HOME/openfpm_vars;# ./pse_1d_128
 
-.PHONY: clean all run
+#.PHONY: clean all run
 
 clean:
 	rm -f *.o *~ core pse_1d_128

example/Numerics/PSE/1_Derivative_approx_1D_mp/main_float128.cpp

@@ -10,11 +10,16 @@
  *
  */
 
+#include "config/config.h"
 #include "Vector/vector_dist.hpp"
 #include "Decomposition/CartDecomposition.hpp"
 #include "PSE/Kernels.hpp"
 #include "data_type/aggregate.hpp"
 #include <cmath>
+
+// This example only work if there is HAVE_LIBQUADMATH
+#ifdef HAVE_LIBQUADMATH
+
 #include <boost/multiprecision/float128.hpp>
 
 typedef boost::multiprecision::float128 float128;
@@ -310,3 +315,11 @@ int main(int argc, char* argv[])
 	//
 	openfpm_finalize();
 }
+
+#else
+
+int main(int argc, char* argv[])
+{
+}
+
+#endif

example/Numerics/PSE/1_Diffusion_1D/Makefile

@@ -15,7 +15,7 @@ diff_1d: $(OBJ)
 all: diff_1d
 
 run: all
-	source $$HOME/openfpm_vars; mpirun -np 4 ./diff_1d
+	mpirun -np 4 ./diff_1d
 
 .PHONY: clean all