Fixing image generation

images/Makefile.am

-
 LINKLIBS = $(PETSC_LIB) $(METIS_LIB) $(PARMETIS_LIB)  $(PTHREAD_LIBS) $(OPT_LIBS) $(BOOST_LDFLAGS) $(BOOST_IOSTREAMS_LIB) $(CUDA_LIBS)
 
 noinst_PROGRAMS = cart_dec metis_dec dom_box vector_dist

images/vector.cpp

@@ -55,15 +55,15 @@ int main(int argc, char* argv[])
 		++it;
 	}
 
-	vd.write("Vector/vector_before_map");
+	vd.write("Vector/vector_before_map",CSV_WRITER);
 
 	vd.map();
 
-	vd.write("Vector/vector_after_map");
+	vd.write("Vector/vector_after_map",CSV_WRITER);
 	
 	vd.ghost_get<0>();
 
-	vd.write("Vector/vector_ghost_fill");
+	vd.write("Vector/vector_ghost_fill",CSV_WRITER);
 
 	vd.getDecomposition().write("Vector/vect_decomposition");
 

install

@@ -158,32 +158,41 @@ fi
 
 lin_alg_dir=""
 lin_alg_lib=""
+lin_alg_inc=""
 if [ -d "$i_dir/PETSC" ]; then
     configure_options="$configure_options --with-petsc=$i_dir/PETSC "
     lin_alg_dir="$lin_alg_dir -L$i_dir/PETSC/lib"
     lin_alg_lib="$lin_alg_lib -lpetsc"
+    lin_alg_inc="$lin_alg_inc -I$i_dir/PETSC/include"
 fi
 if [ -d "$i_dir/HYPRE" ]; then
     lin_alg_dir="$lin_alg_dir -L$i_dir/HYPRE/lib"
+    lin_alg_inc="$lin_alg_inc -I$i_dir/HYPRE/include"
 fi
 if [ -d "$i_dir/MUMPS" ]; then
     lin_alg_dir="$lin_alg_dir -L$i_dir/MUMPS/lib"
+    lin_alg_inc="$lin_alg_inc -I$i_dir/MUMPS/include"
 fi
 if [ -d "$i_dir/OPENBLAS" ]; then
     lin_alg_dir="$lin_alg_dir -L$i_dir/OPENBLAS/lib"
     lin_alg_lib="$lin_alg_lib -lopenblas"
+    lin_alg_inc="$lin_alg_inc -I$i_dir/OPENBLAS/include"
 fi
 if [ -d "$i_dir/SCALAPACK" ]; then
     lin_alg_dir="$lin_alg_dir -L$i_dir/SCALAPACK/lib"
+    lin_alg_inc="$lin_alg_inc -I$i_dir/SCALAPACK/include"
 fi
 if [ -d "$i_dir/SUPERLU_DIST" ]; then
     lin_alg_dir="$lin_alg_dir -L$i_dir/SUPERLU_DIST/lib"
+    lin_alg_inc="$lin_alg_inc -I$i_dir/SUPERLU_DIST/include"
 fi
 if [ -d "$i_dir/TRILINOS" ]; then
     lin_alg_dir="$lin_alg_dir -L$i_dir/TRILINOS/lib"
+    lin_alg_inc="$lin_alg_inc -I$i_dir/TRILINOS/include"
 fi
 if [ -d "$i_dir/SUITESPARSE" ]; then
     lin_alg_dir="$lin_alg_dir -L$i_dir/SUITESPARSE/lib"
+    lin_alg_inc="$lin_alg_inc -I$i_dir/SUITESPARSE/include"
     lin_alg_lib="$lin_alg_lib -lumfpack -lamd -lbtf -lcamd -lccolamd -lcholmod -lcolamd -lcxsparse -lklu -ldl -lrbio -lspqr -lsuitesparseconfig"
 fi
 if [ -d "$i_dir/EIGEN" ]; then
@@ -322,10 +331,10 @@ fi
 
 ### Create example.mk
 install_base=$(cat install_dir)
-echo "INCLUDE_PATH=-I. -I$install_base/openfpm_numerics/include -I$install_base/openfpm_pdata/include/config -I$install_base/openfpm_pdata/include -I$install_base/openfpm_data/include -I$install_base/openfpm_vcluster/include -I$install_base/openfpm_io/include -I$install_base/openfpm_devices/include -I$i_dir/METIS/include -I$i_dir/PARMETIS/include -I$i_dir/BOOST/include -I$i_dir/HDF5/include" > example.mk
+echo "INCLUDE_PATH=-I. -I$install_base/openfpm_numerics/include -I$install_base/openfpm_pdata/include/config -I$install_base/openfpm_pdata/include -I$install_base/openfpm_data/include -I$install_base/openfpm_vcluster/include -I$install_base/openfpm_io/include -I$install_base/openfpm_devices/include -I$i_dir/METIS/include -I$i_dir/PARMETIS/include -I$i_dir/BOOST/include -I$i_dir/HDF5/include $lin_alg_inc" > example.mk
 echo "LIBS_PATH= -L$install_base/openfpm_devices/lib -L$install_base/openfpm_pdata/lib  -L$install_base/openfpm_vcluster/lib -L$i_dir/METIS/lib -L$i_dir/PARMETIS/lib  -L$i_dir/BOOST/lib -L$i_dir/HDF5/lib $lin_alg_dir" >> example.mk
-echo "LIBS=-lvcluster -lofpm_pdata -lofpmmemory -lparmetis -lmetis -lboost_iostreams -lhdf5 $lin_alg_libs" >> example.mk
-echo "LIBS_SE2=-lvcluster -lofpmmemory_se2 -lparmetis -lmetis -lboost_iostreams -lhdf5 $lin_alg_libs" >> example.mk
+echo "LIBS=-lvcluster -lofpm_pdata -lofpmmemory -lparmetis -lmetis -lboost_iostreams -lhdf5 $lin_alg_lib" >> example.mk
+echo "LIBS_SE2=-lvcluster -lofpmmemory_se2 -lparmetis -lmetis -lboost_iostreams -lhdf5 $lin_alg_lib" >> example.mk
 cp example.mk src/example.mk
 cp example.mk example/example.mk