Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
openfpm_pdata
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Wiki
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Build
Pipelines
Jobs
Pipeline schedules
Artifacts
Deploy
Releases
Model registry
Operate
Environments
Monitor
Incidents
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Sbalzarini Lab
Software
Parallel Computing
OpenFPM
openfpm_pdata
Commits
43f868bf
Commit
43f868bf
authored
8 years ago
by
Pietro Incardona
Browse files
Options
Downloads
Patches
Plain Diff
Adding missing files
parent
2b2feea4
No related branches found
Branches containing commit
No related tags found
Tags containing commit
No related merge requests found
Changes
2
Hide whitespace changes
Inline
Side-by-side
Showing
2 changed files
src/Vector/performance/cl_comp_performance_graph.hpp
+281
-0
281 additions, 0 deletions
src/Vector/performance/cl_comp_performance_graph.hpp
src/Vector/performance/cl_part_performance_graph.hpp
+268
-0
268 additions, 0 deletions
src/Vector/performance/cl_part_performance_graph.hpp
with
549 additions
and
0 deletions
src/Vector/performance/cl_comp_performance_graph.hpp
0 → 100644
+
281
−
0
View file @
43f868bf
/*
* performance_graph.hpp
*
* Created on: Dec 23, 2016
* Author: i-bird
*/
#ifndef SRC_VECTOR_PERFORMANCE_CL_COMP_PERFORMANCE_GRAPH_HPP_
#define SRC_VECTOR_PERFORMANCE_CL_COMP_PERFORMANCE_GRAPH_HPP_
#include
"Plot/GoogleChart.hpp"
/////////////////////////// COMPUTATIONAL HILBERT CURVE ORDERING ///////////////////////////////////////
/*! \brief Time to calculate forces using random order or hilber curve compute ordering
*
* \tparam dim dimensionality of the test
*
* \param cg GoogleChart object
* \param cl_n_particles number of particles for each test
* \param cl_r_cutoff cell-list spacing used to construct a cell-list
* \param cl_time_hilb for each particle set, for each cut-off radius time to calculate the forces (Hilbert curve order)
* \param cl_time_rand for each particle set, for each cut-off radius, time to calculate the forces (no order)
*
*/
template
<
unsigned
int
dim
>
void
cl_comp_normal_vs_hilbert_force_time
(
GoogleChart
&
cg
,
openfpm
::
vector
<
size_t
>
&
cl_n_particles
,
openfpm
::
vector
<
float
>
&
cl_r_cutoff
,
openfpm
::
vector
<
openfpm
::
vector
<
double
>>
&
cl_time_hilb_mean
,
openfpm
::
vector
<
openfpm
::
vector
<
double
>>
&
cl_time_rand_mean
,
openfpm
::
vector
<
openfpm
::
vector
<
double
>>
&
cl_time_hilb_dev
,
openfpm
::
vector
<
openfpm
::
vector
<
double
>>
&
cl_time_rand_dev
,
double
&
warning_level
,
double
&
norm
)
{
// Get the test dir
std
::
string
file_mean
(
test_dir
);
std
::
string
file_var
(
test_dir
);
file_mean
+=
std
::
string
(
"/openfpm_pdata/cl_comp_norm_hilbert_mean_"
+
std
::
to_string
(
dim
)
+
std
::
string
(
"_ref"
));
file_var
+=
std
::
string
(
"/openfpm_pdata/cl_comp_norm_hilbert_dev_"
+
std
::
to_string
(
dim
)
+
std
::
string
(
"_ref"
));
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y_ref_mean
;
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y_ref_dev
;
y_ref_mean
.
load
(
file_mean
);
y_ref_dev
.
load
(
file_var
);
openfpm
::
vector
<
int
>
warning_vlevel
;
// time graphs data
openfpm
::
vector
<
size_t
>
x
;
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y
;
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y_dev
;
openfpm
::
vector
<
std
::
string
>
yn
;
for
(
size_t
i
=
0
;
i
<
cl_n_particles
.
size
()
;
i
++
)
x
.
add
(
cl_n_particles
.
get
(
i
));
yn
.
add
(
"Random cell list"
);
yn
.
add
(
"Hilbert cell list"
);
y
.
resize
(
cl_time_hilb_mean
.
size
());
y_dev
.
resize
(
cl_time_hilb_mean
.
size
());
for
(
size_t
r
=
0
;
r
<
cl_time_hilb_mean
.
size
();
r
++
)
{
y
.
get
(
r
).
resize
(
cl_time_hilb_mean
.
get
(
r
).
size
());
y_dev
.
get
(
r
).
resize
(
cl_time_hilb_mean
.
get
(
r
).
size
());
for
(
size_t
k
=
0
;
k
<
cl_time_hilb_mean
.
get
(
r
).
size
();
k
++
)
{
// Time for construction hilbert and random
y
.
get
(
r
).
get
(
k
).
add
(
cl_time_rand_mean
.
get
(
r
).
get
(
k
));
y
.
get
(
r
).
get
(
k
).
add
(
cl_time_hilb_mean
.
get
(
r
).
get
(
k
));
y_dev
.
get
(
r
).
get
(
k
).
add
(
cl_time_rand_dev
.
get
(
r
).
get
(
k
));
y_dev
.
get
(
r
).
get
(
k
).
add
(
cl_time_hilb_dev
.
get
(
r
).
get
(
k
));
}
}
y
.
save
(
"cl_comp_norm_hilbert_mean_"
+
std
::
to_string
(
dim
)
+
std
::
to_string
(
"_ref"
));
y_dev
.
save
(
"cl_comp_norm_hilbert_dev_"
+
std
::
to_string
(
dim
)
+
std
::
to_string
(
"_ref"
));
if
(
y_ref_mean
.
size
()
!=
0
)
{
// We reconstruct y and yn
y
.
clear
();
yn
.
clear
();
yn
.
add
(
"Random cell list"
);
yn
.
add
(
"interval"
);
yn
.
add
(
"interval"
);
yn
.
add
(
"Hilbert cell list"
);
yn
.
add
(
"interval"
);
yn
.
add
(
"interval"
);
y
.
resize
(
cl_time_hilb_mean
.
size
());
for
(
size_t
r
=
0
;
r
<
cl_time_hilb_mean
.
size
();
r
++
)
{
int
warning_level
=
-
1
;
y
.
get
(
r
).
resize
(
cl_time_hilb_mean
.
get
(
r
).
size
());
for
(
size_t
k
=
0
;
k
<
cl_time_hilb_mean
.
get
(
r
).
size
();
k
++
)
{
// Time for construction hilbert and random
y
.
get
(
r
).
get
(
k
).
add
(
cl_time_rand_mean
.
get
(
r
).
get
(
k
));
y
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
0
)
-
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
0
));
y
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
0
)
+
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
0
));
y
.
get
(
r
).
get
(
k
).
add
(
cl_time_hilb_mean
.
get
(
r
).
get
(
k
));
y
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
1
)
-
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
1
));
y
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
1
)
+
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
1
));
warning_set
(
warning_level
,
cl_time_rand_mean
.
get
(
r
).
get
(
k
),
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
0
),
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
0
));
warning_set
(
warning_level
,
cl_time_hilb_mean
.
get
(
r
).
get
(
k
),
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
1
),
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
1
));
}
warning_vlevel
.
add
(
warning_level
);
}
}
// Force time calculation
// Google charts options
GCoptions
options
;
options
.
yAxis
=
std
::
string
(
"Time to calculate force"
);
options
.
xAxis
=
std
::
string
(
"Number of particles"
);
options
.
lineWidth
=
4
;
std
::
string
str
(
"<h1>Cell-list "
+
std
::
to_string
(
dim
)
+
"-D performance test: </h1>"
);
str
+=
"<h2> 1) Time to calculate forces</h2>"
;
cg
.
addHTML
(
str
);
for
(
size_t
i
=
0
;
i
<
cl_r_cutoff
.
size
();
i
++
)
{
std
::
string
chart_area
;
if
(
warning_vlevel
.
size
()
!=
0
)
addchartarea
(
chart_area
,
warning_vlevel
.
get
(
i
));
options
.
more
=
GC_Y_LOG
+
","
+
GC_ZOOM
+
chart_area
;
options
.
title
=
std
::
string
(
"Cell-list performance, cut-off radius: "
+
std
::
to_string
(
cl_r_cutoff
.
get
(
i
)));
cg
.
AddLinesGraph
(
x
,
y
.
get
(
i
),
yn
,
options
);
}
}
/*! \brief Output the graph normal cell-list vs Hilbert cell-list (Total time)
*
* \tparam dim dimensionality of the test
*
* \param cg GoogleChart object
* \param cl_n_particles number of particles for each test
* \param cl_r_cutoff cell-list spacing used to construct a cell-list
* \param cl_time_force_hilb for each particle set, for each cut-off radius, for each order time to calculate the forces
* \param cl_time_force_rand for each particle set, for each cut-off radius, time to calculate the forces
*
*/
template
<
unsigned
int
dim
>
void
cl_comp_normal_vs_hilbert_create_time
(
GoogleChart
&
cg
,
openfpm
::
vector
<
size_t
>
&
cl_n_particles
,
openfpm
::
vector
<
float
>
&
cl_r_cutoff
,
openfpm
::
vector
<
openfpm
::
vector
<
double
>>
&
cl_time_create_hilb_mean
,
openfpm
::
vector
<
openfpm
::
vector
<
double
>>
&
cl_time_create_rand_mean
,
openfpm
::
vector
<
openfpm
::
vector
<
double
>>
&
cl_time_create_hilb_dev
,
openfpm
::
vector
<
openfpm
::
vector
<
double
>>
&
cl_time_create_rand_dev
,
double
&
warning_level
,
double
&
norm
)
{
// Get the test dir
std
::
string
file_mean
(
test_dir
);
std
::
string
file_var
(
test_dir
);
file_mean
+=
std
::
string
(
"/openfpm_pdata/cl_comp_create_norm_hilbert_mean_"
+
std
::
to_string
(
dim
)
+
std
::
string
(
"_ref"
));
file_var
+=
std
::
string
(
"/openfpm_pdata/cl_comp_create_norm_hilbert_dev_"
+
std
::
to_string
(
dim
)
+
std
::
string
(
"_ref"
));
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y_ref_mean
;
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y_ref_dev
;
y_ref_mean
.
load
(
file_mean
);
y_ref_dev
.
load
(
file_var
);
// warning level
openfpm
::
vector
<
int
>
warning_vlevel
;
// Calculation time graphs data
openfpm
::
vector
<
size_t
>
x
;
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y2
;
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y2_dev
;
openfpm
::
vector
<
std
::
string
>
yn2
;
yn2
.
add
(
"Random cell list"
);
yn2
.
add
(
"Hilbert cell list"
);
for
(
size_t
i
=
0
;
i
<
cl_n_particles
.
size
()
;
i
++
)
x
.
add
(
cl_n_particles
.
get
(
i
));
y2
.
resize
(
cl_time_create_hilb_mean
.
size
());
y2_dev
.
resize
(
cl_time_create_hilb_mean
.
size
());
for
(
size_t
r
=
0
;
r
<
cl_time_create_hilb_mean
.
size
();
r
++
)
{
y2
.
get
(
r
).
resize
(
cl_time_create_hilb_mean
.
get
(
r
).
size
());
y2_dev
.
get
(
r
).
resize
(
cl_time_create_hilb_mean
.
get
(
r
).
size
());
for
(
size_t
k
=
0
;
k
<
cl_time_create_hilb_mean
.
get
(
r
).
size
();
k
++
)
{
// Put a total time
y2
.
get
(
r
).
get
(
k
).
add
(
cl_time_create_rand_mean
.
get
(
r
).
get
(
k
));
y2
.
get
(
r
).
get
(
k
).
add
(
cl_time_create_hilb_mean
.
get
(
r
).
get
(
k
));
y2_dev
.
get
(
r
).
get
(
k
).
add
(
cl_time_create_rand_dev
.
get
(
r
).
get
(
k
));
y2_dev
.
get
(
r
).
get
(
k
).
add
(
cl_time_create_hilb_dev
.
get
(
r
).
get
(
k
));
}
}
y2
.
save
(
"cl_comp_create_norm_hilbert_mean_"
+
std
::
to_string
(
dim
)
+
std
::
to_string
(
"_ref"
));
y2_dev
.
save
(
"cl_comp_create_norm_hilbert_dev_"
+
std
::
to_string
(
dim
)
+
std
::
to_string
(
"_ref"
));
if
(
y_ref_mean
.
size
()
!=
0
)
{
// We reconstruct y and yn
y2
.
clear
();
yn2
.
clear
();
yn2
.
add
(
"Random cell list"
);
yn2
.
add
(
"interval"
);
yn2
.
add
(
"interval"
);
yn2
.
add
(
"Hilbert cell list"
);
yn2
.
add
(
"interval"
);
yn2
.
add
(
"interval"
);
y2
.
resize
(
cl_time_create_hilb_mean
.
size
());
for
(
size_t
r
=
0
;
r
<
cl_time_create_hilb_mean
.
size
();
r
++
)
{
int
warning_level
=
-
1
;
y2
.
get
(
r
).
resize
(
cl_time_create_hilb_mean
.
get
(
r
).
size
());
for
(
size_t
k
=
0
;
k
<
cl_time_create_hilb_mean
.
get
(
r
).
size
();
k
++
)
{
// Time for construction hilbert and random
y2
.
get
(
r
).
get
(
k
).
add
(
cl_time_create_rand_mean
.
get
(
r
).
get
(
k
));
y2
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
0
)
-
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
0
));
y2
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
0
)
+
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
0
));
y2
.
get
(
r
).
get
(
k
).
add
(
cl_time_create_hilb_mean
.
get
(
r
).
get
(
k
));
y2
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
1
)
-
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
1
));
y2
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
1
)
+
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
1
));
warning_set
(
warning_level
,
cl_time_create_rand_mean
.
get
(
r
).
get
(
k
),
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
0
),
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
0
));
warning_set
(
warning_level
,
cl_time_create_rand_mean
.
get
(
r
).
get
(
k
),
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
1
),
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
1
));
}
warning_vlevel
.
add
(
warning_level
);
}
}
// Calculation time graphs report
// Google charts options
GCoptions
options2
;
options2
.
yAxis
=
std
::
string
(
"Time to create the cell-list"
);
options2
.
xAxis
=
std
::
string
(
"Number of particles"
);
options2
.
lineWidth
=
4
;
std
::
string
str2
(
"<h2>2) Time to create the cell-list</h2>"
);
cg
.
addHTML
(
str2
);
for
(
size_t
i
=
0
;
i
<
cl_r_cutoff
.
size
();
i
++
)
{
std
::
string
chart_area
;
if
(
warning_vlevel
.
size
()
!=
0
)
addchartarea
(
chart_area
,
warning_vlevel
.
get
(
i
));
options2
.
more
=
GC_Y_LOG
+
","
+
GC_ZOOM
+
chart_area
;
options2
.
title
=
std
::
string
(
"Cell-list performance, cut-off radius: "
+
std
::
to_string
(
cl_r_cutoff
.
get
(
i
)));
cg
.
AddLinesGraph
(
x
,
y2
.
get
(
i
),
yn2
,
options2
);
}
}
///////////////////////////////// PARTICLE REORDERING //////////////////////////////////////////////////////
#endif
/* SRC_VECTOR_PERFORMANCE_CL_COMP_PERFORMANCE_GRAPH_HPP_ */
This diff is collapsed.
Click to expand it.
src/Vector/performance/cl_part_performance_graph.hpp
0 → 100644
+
268
−
0
View file @
43f868bf
/*
* cl_part_performance_graph.hpp
*
* Created on: Dec 23, 2016
* Author: i-bird
*/
#ifndef SRC_VECTOR_PERFORMANCE_CL_PART_PERFORMANCE_GRAPH_HPP_
#define SRC_VECTOR_PERFORMANCE_CL_PART_PERFORMANCE_GRAPH_HPP_
template
<
unsigned
int
dim
>
void
cl_part_time
(
GoogleChart
&
cg
,
openfpm
::
vector
<
size_t
>
&
cl_n_particles
,
openfpm
::
vector
<
float
>
&
cl_r_cutoff
,
openfpm
::
vector
<
size_t
>
&
cl_orders
,
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
cl_time_hilb_mean
,
openfpm
::
vector
<
openfpm
::
vector
<
double
>>
cl_time_rand_mean
,
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
cl_time_hilb_dev
,
openfpm
::
vector
<
openfpm
::
vector
<
double
>>
cl_time_rand_dev
)
{
// Get the test dir
std
::
string
file_mean
(
test_dir
);
std
::
string
file_var
(
test_dir
);
file_mean
+=
std
::
string
(
"/openfpm_pdata/cl_part_norm_hilbert_mean_"
+
std
::
to_string
(
dim
)
+
std
::
string
(
"_ref"
));
file_var
+=
std
::
string
(
"/openfpm_pdata/cl_part_norm_hilbert_dev_"
+
std
::
to_string
(
dim
)
+
std
::
string
(
"_ref"
));
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y_ref_mean
;
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y_ref_dev
;
y_ref_mean
.
load
(
file_mean
);
y_ref_dev
.
load
(
file_var
);
// warning level
openfpm
::
vector
<
int
>
warning_vlevel
;
// Speedup graphs data
openfpm
::
vector
<
size_t
>
x
;
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y
;
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y_dev
;
openfpm
::
vector
<
std
::
string
>
yn
;
for
(
size_t
i
=
0
;
i
<
cl_n_particles
.
size
()
;
i
++
)
x
.
add
(
cl_n_particles
.
get
(
i
));
for
(
size_t
i
=
0
;
i
<
cl_orders
.
size
();
i
++
)
yn
.
add
(
"Order of: "
+
std
::
to_string
(
cl_orders
.
get
(
i
)));
yn
.
add
(
"No-order"
);
// Add reorder time
y
.
resize
(
cl_time_hilb_mean
.
size
());
y_dev
.
resize
(
cl_time_hilb_dev
.
size
());
for
(
size_t
r
=
0
;
r
<
cl_time_hilb_mean
.
size
();
r
++
)
{
y
.
get
(
r
).
resize
(
cl_time_hilb_mean
.
get
(
r
).
size
());
y_dev
.
get
(
r
).
resize
(
cl_time_hilb_mean
.
get
(
r
).
size
());
for
(
size_t
k
=
0
;
k
<
cl_time_hilb_mean
.
get
(
r
).
size
();
k
++
)
{
// reorder time
for
(
size_t
m
=
0
;
m
<
cl_time_hilb_mean
.
get
(
r
).
get
(
k
).
size
();
m
++
)
{
// Put time
y
.
get
(
r
).
get
(
k
).
add
(
cl_time_hilb_mean
.
get
(
r
).
get
(
k
).
get
(
m
));
y_dev
.
get
(
r
).
get
(
k
).
add
(
cl_time_hilb_dev
.
get
(
r
).
get
(
k
).
get
(
m
));
}
// no reorder time
y
.
get
(
r
).
get
(
k
).
add
(
cl_time_rand_mean
.
get
(
r
).
get
(
k
));
y_dev
.
get
(
r
).
get
(
k
).
add
(
cl_time_rand_dev
.
get
(
r
).
get
(
k
));
}
}
// Save y
y
.
save
(
"cl_part_norm_hilbert_mean_"
+
std
::
to_string
(
dim
)
+
std
::
to_string
(
"_ref"
));
y_dev
.
save
(
"cl_part_norm_hilbert_dev_"
+
std
::
to_string
(
dim
)
+
std
::
to_string
(
"_ref"
));
if
(
y_ref_mean
.
size
()
!=
0
)
{
yn
.
clear
();
y
.
clear
();
for
(
size_t
i
=
0
;
i
<
cl_orders
.
size
();
i
++
)
{
yn
.
add
(
"Order of: "
+
std
::
to_string
(
cl_orders
.
get
(
i
)));
yn
.
add
(
"interval"
);
yn
.
add
(
"interval"
);
}
yn
.
add
(
"No-order"
);
yn
.
add
(
"interval"
);
yn
.
add
(
"interval"
);
// Add reorder time
y
.
resize
(
cl_time_hilb_mean
.
size
());
for
(
size_t
r
=
0
;
r
<
cl_time_hilb_mean
.
size
();
r
++
)
{
int
warning_level
=
-
1
;
y
.
get
(
r
).
resize
(
cl_time_hilb_mean
.
get
(
r
).
size
());
for
(
size_t
k
=
0
;
k
<
cl_time_hilb_mean
.
get
(
r
).
size
();
k
++
)
{
// reorder time
size_t
m
=
0
;
for
(
;
m
<
cl_time_hilb_mean
.
get
(
r
).
get
(
k
).
size
();
m
++
)
{
// Put time
y
.
get
(
r
).
get
(
k
).
add
(
cl_time_hilb_mean
.
get
(
r
).
get
(
k
).
get
(
m
));
y
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
m
)
-
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
m
)
);
y
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
m
)
+
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
m
)
);
warning_set
(
warning_level
,
cl_time_hilb_mean
.
get
(
r
).
get
(
k
).
get
(
m
),
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
m
),
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
m
));
}
// no reorder time
y
.
get
(
r
).
get
(
k
).
add
(
cl_time_rand_mean
.
get
(
r
).
get
(
k
));
y
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
m
)
-
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
m
)
);
y
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
m
)
+
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
m
)
);
warning_set
(
warning_level
,
cl_time_rand_mean
.
get
(
r
).
get
(
k
),
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
m
),
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
m
));
}
warning_vlevel
.
add
(
warning_level
);
}
}
// Speedup graphs report
// Google charts options
GCoptions
options
;
options
.
yAxis
=
std
::
string
(
"Time (s)"
);
options
.
xAxis
=
std
::
string
(
"Number of particles"
);
options
.
lineWidth
=
2
;
options
.
more
=
GC_Y_LOG
+
","
+
GC_ZOOM
;
//options.more = "hAxis: {logScale: true}";
std
::
string
str
(
"<h1>Cell-list "
+
std
::
to_string
(
dim
)
+
"-D performance tests: </h1>"
);
str
+=
"<h2> 1) Time to calculate forces in the case of particles randomly ordered in a vector of particles, and in the case of particles ordered along an hilbert curve of order N</h2>"
;
cg
.
addHTML
(
str
);
for
(
size_t
i
=
0
;
i
<
cl_r_cutoff
.
size
();
i
++
)
{
options
.
title
=
std
::
string
(
"Cell-list performance, cut-off radius: "
+
std
::
to_string
(
cl_r_cutoff
.
get
(
i
)));
cg
.
AddLinesGraph
(
x
,
y
.
get
(
i
),
yn
,
options
);
}
}
template
<
unsigned
int
dim
>
void
cl_part_reorder_time
(
GoogleChart
&
cg
,
openfpm
::
vector
<
size_t
>
&
cl_n_particles
,
openfpm
::
vector
<
float
>
&
cl_r_cutoff
,
openfpm
::
vector
<
size_t
>
&
cl_orders
,
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
cl_time_reorder_mean
,
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
cl_time_reorder_dev
)
{
// Get the test dir
std
::
string
file_mean
(
test_dir
);
std
::
string
file_var
(
test_dir
);
file_mean
+=
std
::
string
(
"/openfpm_pdata/cl_part_reorder_hilbert_mean_"
+
std
::
to_string
(
dim
)
+
std
::
string
(
"_ref"
));
file_var
+=
std
::
string
(
"/openfpm_pdata/cl_part_reorder_hilbert_dev_"
+
std
::
to_string
(
dim
)
+
std
::
string
(
"_ref"
));
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y_ref_mean
;
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y_ref_dev
;
y_ref_mean
.
load
(
file_mean
);
y_ref_dev
.
load
(
file_var
);
// warning level
openfpm
::
vector
<
int
>
warning_vlevel
;
// graphs data
openfpm
::
vector
<
size_t
>
x
;
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y
;
openfpm
::
vector
<
openfpm
::
vector
<
openfpm
::
vector
<
double
>>>
y_dev
;
openfpm
::
vector
<
std
::
string
>
yn
;
for
(
size_t
i
=
0
;
i
<
cl_n_particles
.
size
()
;
i
++
)
x
.
add
(
cl_n_particles
.
get
(
i
));
for
(
size_t
i
=
0
;
i
<
cl_orders
.
size
();
i
++
)
yn
.
add
(
"Order of: "
+
std
::
to_string
(
cl_orders
.
get
(
i
)));
// Add reorder time
y
.
resize
(
cl_time_reorder_mean
.
size
());
y_dev
.
resize
(
cl_time_reorder_dev
.
size
());
for
(
size_t
r
=
0
;
r
<
cl_time_reorder_mean
.
size
();
r
++
)
{
y
.
get
(
r
).
resize
(
cl_time_reorder_mean
.
get
(
r
).
size
());
y_dev
.
get
(
r
).
resize
(
cl_time_reorder_mean
.
get
(
r
).
size
());
for
(
size_t
k
=
0
;
k
<
cl_time_reorder_mean
.
get
(
r
).
size
();
k
++
)
{
// reorder time
for
(
size_t
m
=
0
;
m
<
cl_time_reorder_mean
.
get
(
r
).
get
(
k
).
size
();
m
++
)
{
// Put time
y
.
get
(
r
).
get
(
k
).
add
(
cl_time_reorder_mean
.
get
(
r
).
get
(
k
).
get
(
m
));
y_dev
.
get
(
r
).
get
(
k
).
add
(
cl_time_reorder_dev
.
get
(
r
).
get
(
k
).
get
(
m
));
}
}
}
// Save y
y
.
save
(
"cl_part_reorder_hilbert_mean_"
+
std
::
to_string
(
dim
)
+
std
::
to_string
(
"_ref"
));
y_dev
.
save
(
"cl_part_reorder_hilbert_dev_"
+
std
::
to_string
(
dim
)
+
std
::
to_string
(
"_ref"
));
if
(
y_ref_mean
.
size
()
!=
0
)
{
yn
.
clear
();
y
.
clear
();
size_t
i
=
cl_orders
.
size
()
-
1
;
yn
.
add
(
"Order of: "
+
std
::
to_string
(
cl_orders
.
get
(
i
)));
yn
.
add
(
"interval"
);
yn
.
add
(
"interval"
);
// Add reorder time
y
.
resize
(
cl_time_reorder_mean
.
size
());
for
(
size_t
r
=
0
;
r
<
cl_time_reorder_mean
.
size
();
r
++
)
{
int
warning_level
=
-
1
;
y
.
get
(
r
).
resize
(
cl_time_reorder_mean
.
get
(
r
).
size
());
for
(
size_t
k
=
0
;
k
<
cl_time_reorder_mean
.
get
(
r
).
size
();
k
++
)
{
// reorder time
size_t
m
=
cl_orders
.
size
()
-
1
;
// Put time
y
.
get
(
r
).
get
(
k
).
add
(
cl_time_reorder_mean
.
get
(
r
).
get
(
k
).
get
(
m
));
y
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
m
)
-
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
m
)
);
y
.
get
(
r
).
get
(
k
).
add
(
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
m
)
+
3.0
*
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
m
)
);
warning_set
(
warning_level
,
cl_time_reorder_mean
.
get
(
r
).
get
(
k
).
get
(
m
),
y_ref_mean
.
get
(
r
).
get
(
k
).
get
(
m
),
y_ref_dev
.
get
(
r
).
get
(
k
).
get
(
m
));
}
warning_vlevel
.
add
(
warning_level
);
}
}
// Speedup graphs report
// Google charts options
GCoptions
options
;
options
.
yAxis
=
std
::
string
(
"Time (s)"
);
options
.
xAxis
=
std
::
string
(
"Number of particles"
);
options
.
lineWidth
=
2
;
options
.
more
=
GC_ZOOM
;
//options.more = "hAxis: {logScale: true}";
std
::
string
str
(
"<h1>Cell-list "
+
std
::
to_string
(
dim
)
+
"-D performance tests: </h1>"
);
str
+=
"<h2> 1) Time to reorder the distributed vector</h2>"
;
cg
.
addHTML
(
str
);
for
(
size_t
i
=
0
;
i
<
cl_r_cutoff
.
size
();
i
++
)
{
std
::
string
chart_area
;
if
(
warning_vlevel
.
size
()
!=
0
)
addchartarea
(
chart_area
,
warning_vlevel
.
get
(
i
));
options
.
more
=
GC_Y_LOG
+
","
+
GC_ZOOM
+
chart_area
;
options
.
title
=
std
::
string
(
"Cell-list performance, cut-off radius: "
+
std
::
to_string
(
cl_r_cutoff
.
get
(
i
)));
cg
.
AddLinesGraph
(
x
,
y
.
get
(
i
),
yn
,
options
);
}
}
#endif
/* SRC_VECTOR_PERFORMANCE_CL_PART_PERFORMANCE_GRAPH_HPP_ */
This diff is collapsed.
Click to expand it.
Preview
0%
Loading
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment