Added jenkins script

build_pdata.sh

+#! /bin/bash
+
+# Make a directory in /tmp/OpenFPM_data
+
+echo "Directory: $1"
+echo "Machine: $2"
+
+mkdir /tmp/openfpm_pdata
+mv * .[^.]* /tmp/openfpm_pdata
+mv /tmp/openfpm_pdata OpenFPM_pdata
+
+mkdir OpenFPM_pdata/src/config
+
+git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_vcluster.git OpenFPM_vcluster
+git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_devices.git OpenFPM_devices
+git clone ssh://git@ppmcoremirror.dynu.com:2222/incardon/openfpm_data.git OpenFPM_data
+cd OpenFPM_pdata
+git checkout develop
+cd ..
+
+cd "$1/OpenFPM_pdata"
+
+if [ "$2" == "gin" ]
+then
+ echo "Compiling on gin\n"
+ module load gcc/4.9.2
+ module load openmpi/1.8.1
+elif [ "$2" == "wetcluster" ]
+then
+ echo "Compiling on wetcluster"
+
+## produce the module path
+
+ export MODULEPATH="/sw/apps/modules/modulefiles:$MODULEPATH"
+
+ script="module load gcc/4.9.2\n 
+module load openmpi/1.8.1\n
+module load boost/1.54.0\n
+compile_options='--with-boost=/sw/apps/boost/1.54.0/'\n
+\n
+sh ./autogen.sh\n
+sh ./configure \"\$compile_options\"  CXX=mpic++\n
+make\n
+if [ \"\$?\" = "0" ]; then exit 1 ; fi\n
+exit(0)\n"
+
+ echo $script | sed -r 's/\\n/\n/g' > compile_script
+
+ bsub -o output_compile.%J -K -n 1 -J compile sh ./compile_script
+
+## Run on the cluster
+ bsub -o output_run2.%J -K -n 2 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 2 ./src/pdata"
+ if [ $? -ne 0 ]; then exit 1 ; fi
+ bsub -o output_run3.%J -K -n 3 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 3 ./src/pdata"
+ if [ $? -ne 0 ]; then exit 1 ; fi
+ bsub -o output_run4.%J -K -n 4 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 4 ./src/pdata"
+ if [ $? -ne 0 ]; then exit 1 ; fi
+ bsub -o output_run5.%J -K -n 5 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 5 ./src/pdata"
+ if [ $? -ne 0 ]; then exit 1 ; fi
+ bsub -o output_run6.%J -K -n 6 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 6 ./src/pdata"
+ if [ $? -ne 0 ]; then exit 1 ; fi
+ bsub -o output_run6.%J -K -n 7 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 7 ./src/pdata"
+ if [ $? -ne 0 ]; then exit 1 ; fi
+ bsub -o output_run6.%J -K -n 8 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 8 ./src/pdata"
+ if [ $? -ne 0 ]; then exit 1 ; fi
+ bsub -o output_run6.%J -K -n 9 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 9 ./src/pdata"
+ if [ $? -ne 0 ]; then exit 1 ; fi
+ bsub -o output_run6.%J -K -n 10 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 10 ./src/pdata"
+ if [ $? -ne 0 ]; then exit 1 ; fi
+ bsub -o output_run6.%J -K -n 11 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 11 ./src/pdata"
+ if [ $? -ne 0 ]; then exit 1 ; fi
+ bsub -o output_run12.%J -K -n 12 -R "span[hosts=1]" "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 12 ./src/vcluster"
+ if [ $? -ne 0 ]; then exit 1 ; fi
+# bsub -o output_run32.%J -K -n 32 "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 32 ./src/vcluster"
+# if [ $? -ne 0 ]; then exit 1 ; fi
+# bsub -o output_run32.%J -K -n 64 "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 64 ./src/vcluster"
+# if [ $? -ne 0 ]; then exit 1 ; fi
+# bsub -o output_run32.%J -K -n 128 "module load openmpi/1.8.1 ; module load gcc/4.9.2;  mpirun -np 128 ./src/vcluster"
+# if [ $? -ne 0 ]; then exit 1 ; fi
+elif [ "$2" == "taurus" ]
+then
+ echo "Compiling on taurus"
+
+ echo "$PATH"
+ module load gcc/4.8.2
+ module load boost/1.55.0-gnu4.8
+ module load openmpi/1.8.7
+ module unload bullxmpi
+
+ sh ./autogen.sh
+ sh ./configure --enable-verbose CXX=mpic++
+ make
+ if [ $? -ne 0 ]; then exit 1 ; fi
+
+# salloc --nodes=1 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 16 src/vcluster"
+# if [ $? -ne 0 ]; then exit 1 ; fi
+# salloc --nodes=2 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 32 src/vcluster"
+# if [ $? -ne 0 ]; then exit 1 ; fi
+# salloc --nodes=4 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 64 src/vcluster"
+# if [ $? -ne 0 ]; then exit 1 ; fi
+# salloc --nodes=8 --ntasks-per-node=16 --time=00:05:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 128 src/vcluster"
+# if [ $? -ne 0 ]; then exit 1 ; fi
+# salloc --nodes=16 --ntasks-per-node=16 --time=00:5:00 --mem-per-cpu=1900 --partition=haswell bash -c "ulimit -s unlimited && mpirun -np 256 src/vcluster"
+# if [ $? -ne 0 ]; then exit 1 ; fi
+
+else
+ echo "Compiling general"
+ sh ./autogen.sh
+ sh ./configure  CXX=mpic++
+ make
+
+ mpirun -np 2 ./src/pdata
+ mpirun -np 3 ./src/pdata
+ mpirun -np 4 ./src/pdata
+fi
+
+
+