Skip to content
GitLab
Menu
Projects
Groups
Snippets
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Sbalzarini Lab
S
Software
P
Parallel Computing
OpenFPM
openfpm_pdata
Commits
8f6a7aa3
Commit
8f6a7aa3
authored
Sep 29, 2016
by
incardon
Browse files
Fixing installation with PETSC
parent
6f3a9c09
Changes
5
Hide whitespace changes
Inline
Side-by-side
configure.ac
View file @
8f6a7aa3
...
...
@@ -150,6 +150,8 @@ AC_CHECK_LIB(quadmath, sinq, [AC_DEFINE(HAVE_LIBQUADMATH,[],[Have quad math lib]
AC_SUBST(OPENMP_CFLAGS)
AC_SUBST(OPENMP_LDFLAGS)
echo "$OPENMP_CFLAGS" > openmp_flags
########
## Enable scan coverty
...
...
example/Numerics/Stoke_flow/1_3D_incompressible/Makefile
View file @
8f6a7aa3
...
...
@@ -8,7 +8,7 @@ OBJ_EIGEN = main_eigen.o
OBJ_PETSC
=
main_petsc.o
%.o
:
%.cpp
$(CC)
-fext-numeric-literals
-O3
-c
--std
=
c++11
-o
$@
$<
$(INCLUDE_PATH)
$(CC)
-fopenmp
-fext-numeric-literals
-O3
-c
--std
=
c++11
-o
$@
$<
$(INCLUDE_PATH)
all
:
stokes_3d_eigen stokes_3d_petsc
...
...
install
View file @
8f6a7aa3
...
...
@@ -6,6 +6,7 @@ source script/show_solutions
source
script/pre_req
source
script/remove_old
source
script/set_mpi
source
script/conf_PETSC
## Check that your home is not empty
...
...
@@ -166,48 +167,6 @@ fi
lin_alg_dir
=
""
lin_alg_lib
=
""
lin_alg_inc
=
""
if
[
-d
"
$i_dir
/PETSC"
]
;
then
configure_options
=
"
$configure_options
--with-petsc=
$i_dir
/PETSC "
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/PETSC/lib"
lin_alg_lib
=
"
$lin_alg_lib
-lpetsc"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/PETSC/include"
fi
if
[
-d
"
$i_dir
/HYPRE"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/HYPRE/lib"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/HYPRE/include"
fi
if
[
-d
"
$i_dir
/MUMPS"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/MUMPS/lib"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/MUMPS/include"
fi
if
[
-d
"
$i_dir
/OPENBLAS"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/OPENBLAS/lib"
lin_alg_lib
=
"
$lin_alg_lib
-lopenblas"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/OPENBLAS/include"
configure_blas_option
=
"--with-blas=-L
$i_dir
/OPENBLAS/lib -lopenblas"
fi
if
[
-d
"
$i_dir
/SCALAPACK"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/SCALAPACK/lib"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/SCALAPACK/include"
fi
if
[
-d
"
$i_dir
/SUPERLU_DIST"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/SUPERLU_DIST/lib"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/SUPERLU_DIST/include"
fi
if
[
-d
"
$i_dir
/TRILINOS"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/TRILINOS/lib"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/TRILINOS/include"
fi
if
[
-d
"
$i_dir
/SUITESPARSE"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/SUITESPARSE/lib"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/SUITESPARSE/include"
lin_alg_lib
=
"
$lin_alg_lib
-lumfpack -lamd -lbtf -lcamd -lccolamd -lcholmod -lcolamd -lcxsparse -lklu -ldl -lrbio -lspqr -lsuitesparseconfig"
configure_options
=
"
$configure_options
--with-suitesparse=
$i_dir
/SUITESPARSE "
fi
if
[
-d
"
$i_dir
/EIGEN"
]
;
then
configure_options
=
"
$configure_options
--with-eigen=
$i_dir
/EIGEN "
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/EIGEN"
fi
if
[
-d
"
$i_dir
/METIS"
]
;
then
configure_options
=
"
$configure_options
--with-metis=
$i_dir
/METIS "
fi
...
...
@@ -259,7 +218,7 @@ LIBHILBERT_installed=0
conf_err
=
1
if
[
$install_req
-eq
0
]
;
then
./configure
$options
$configure_options
$configure_blas_option
./configure
$options
$configure_options
"
$configure_blas_option
"
else
while
[
$conf_err
-ne
0
]
do
...
...
@@ -332,24 +291,21 @@ else
if
[
x
"
$inst_lin_alg
"
==
x
"y"
]
;
then
./script/install_EIGEN.sh
$i_dir
$ncore
if
[
$?
-eq
0
]
;
then
configure_options
=
"
$configure_options
--with-eigen=
$i_dir
/EIGEN --with-suitesparse=
$i_dir
/SUITESPARSE "
configure_blas_option
=
" --with-blas=
\"
$i_dir
/OPENBLAS/lib -lopenblas
\"
"
fi
./script/install_PETSC.sh
$i_dir
$ncore
if
[
$?
-eq
0
]
;
then
configure_options
=
"
$configure_options
--with-petsc=
$i_dir
/PETSC "
fi
fi
./configure
$options
$configure_options
$configure_blas_option
### collect PETSC configuration options
conf_PETSC
./configure
$options
$configure_options
"
$configure_blas_option
"
fi
### Create example.mk
install_base
=
$(
cat
install_dir
)
echo
"INCLUDE_PATH=-I. -I
$install_base
/openfpm_numerics/include -I
$install_base
/openfpm_pdata/include/config -I
$install_base
/openfpm_pdata/include -I
$install_base
/openfpm_data/include -I
$install_base
/openfpm_vcluster/include -I
$install_base
/openfpm_io/include -I
$install_base
/openfpm_devices/include -I
$i_dir
/METIS/include -I
$i_dir
/PARMETIS/include -I
$i_dir
/BOOST/include -I
$i_dir
/HDF5/include -I
$i_dir
/LIBHILBERT/include
$lin_alg_inc
"
>
example.mk
echo
"LIBS_PATH= -L
$install_base
/openfpm_devices/lib -L
$install_base
/openfpm_pdata/lib -L
$install_base
/openfpm_vcluster/lib -L
$i_dir
/METIS/lib -L
$i_dir
/PARMETIS/lib -L
$i_dir
/BOOST/lib -L
$i_dir
/HDF5/lib -L
$i_dir
/LIBHILBERT/lib
$lin_alg_dir
"
>>
example.mk
openmp_flags
=
$(
cat
openmp_flags
)
echo
"INCLUDE_PATH=
$openmp_flags
-I. -I
$install_base
/openfpm_numerics/include -I
$install_base
/openfpm_pdata/include/config -I
$install_base
/openfpm_pdata/include -I
$install_base
/openfpm_data/include -I
$install_base
/openfpm_vcluster/include -I
$install_base
/openfpm_io/include -I
$install_base
/openfpm_devices/include -I
$i_dir
/METIS/include -I
$i_dir
/PARMETIS/include -I
$i_dir
/BOOST/include -I
$i_dir
/HDF5/include -I
$i_dir
/LIBHILBERT/include
$lin_alg_inc
"
>
example.mk
echo
"LIBS_PATH=
$openmp_flags
-L
$install_base
/openfpm_devices/lib -L
$install_base
/openfpm_pdata/lib -L
$install_base
/openfpm_vcluster/lib -L
$i_dir
/METIS/lib -L
$i_dir
/PARMETIS/lib -L
$i_dir
/BOOST/lib -L
$i_dir
/HDF5/lib -L
$i_dir
/LIBHILBERT/lib
$lin_alg_dir
"
>>
example.mk
echo
"LIBS=-lvcluster -lofpm_pdata -lofpmmemory -lparmetis -lmetis -lboost_iostreams -lhdf5 -llibhilbert
$lin_alg_lib
"
>>
example.mk
echo
"LIBS_SE2=-lvcluster -lofpmmemory_se2 -lparmetis -lmetis -lboost_iostreams -lhdf5 -llibhilbert
$lin_alg_lib
"
>>
example.mk
cp
example.mk src/example.mk
...
...
script/conf_PETSC
0 → 100755
View file @
8f6a7aa3
#! /bin/bash
function
conf_PETSC
()
{
if
[
-d
"
$i_dir
/PETSC"
]
;
then
configure_options
=
"
$configure_options
--with-petsc=
$i_dir
/PETSC "
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/PETSC/lib"
lin_alg_lib
=
"
$lin_alg_lib
-lpetsc"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/PETSC/include"
fi
if
[
-d
"
$i_dir
/HYPRE"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/HYPRE/lib"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/HYPRE/include"
fi
if
[
-d
"
$i_dir
/MUMPS"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/MUMPS/lib"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/MUMPS/include"
fi
if
[
-d
"
$i_dir
/OPENBLAS"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/OPENBLAS/lib"
lin_alg_lib
=
"
$lin_alg_lib
-lopenblas"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/OPENBLAS/include"
configure_blas_option
=
"--with-blas=-L
$i_dir
/OPENBLAS/lib -lopenblas"
fi
if
[
-d
"
$i_dir
/SCALAPACK"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/SCALAPACK/lib"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/SCALAPACK/include"
fi
if
[
-d
"
$i_dir
/SUPERLU_DIST"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/SUPERLU_DIST/lib"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/SUPERLU_DIST/include"
fi
if
[
-d
"
$i_dir
/TRILINOS"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/TRILINOS/lib"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/TRILINOS/include"
fi
if
[
-d
"
$i_dir
/SUITESPARSE"
]
;
then
lin_alg_dir
=
"
$lin_alg_dir
-L
$i_dir
/SUITESPARSE/lib"
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/SUITESPARSE/include"
lin_alg_lib
=
"
$lin_alg_lib
-lumfpack -lamd -lbtf -lcamd -lccolamd -lcholmod -lcolamd -lcxsparse -lklu -ldl -lrbio -lspqr -lsuitesparseconfig"
configure_options
=
"
$configure_options
--with-suitesparse=
$i_dir
/SUITESPARSE "
fi
if
[
-d
"
$i_dir
/EIGEN"
]
;
then
configure_options
=
"
$configure_options
--with-eigen=
$i_dir
/EIGEN "
lin_alg_inc
=
"
$lin_alg_inc
-I
$i_dir
/EIGEN"
fi
}
script/install_PETSC.sh
View file @
8f6a7aa3
...
...
@@ -298,4 +298,7 @@ make install
# if empty remove the folder
if
[
!
"
$(
ls
-A
$1
/PETSC
)
"
]
;
then
rm
-rf
$1
/PETSC
else
exit
0
fi
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment