All test working

configure.ac

@@ -40,6 +40,7 @@ m4_ifdef([AX_SUITESPARSE],,[m4_include([m4/ax_suitesparse.m4])])
 m4_ifdef([AX_EIGEN],,[m4_include([m4/ax_eigen.m4])])
 m4_ifdef([AX_LIB_HDF5],,[m4_include([m4/ax_lib_hdf5.m4])])
 m4_ifdef([AX_LIB_PETSC],,[m4/ax_petsc_lib.m4])
+m4_ifdef([AX_LIB_HILBERT],,[m4/ax_libhilbert.m4])
 
 case $host_os in
    *darwin*|*macosx*)
@@ -129,6 +130,13 @@ fi
 
 ##########
 
+## Check for LIBHILBERT
+
+AX_LIB_HILBERT([],[echo "Cannot detect libhilbert, use the --with-libhilbert option if it is not installed in the default location"
+                    exit 210])
+
+##########
+
 ## Check for PETSC
 
 AX_LIB_PETSC()

images/Makefile.am

-LINKLIBS = $(PETSC_LIB) $(METIS_LIB) $(PARMETIS_LIB)  $(PTHREAD_LIBS) $(OPT_LIBS) $(BOOST_LDFLAGS) $(BOOST_IOSTREAMS_LIB) $(CUDA_LIBS)
+LINKLIBS = $(LIBHILBERT_LIB) $(PETSC_LIB) $(METIS_LIB) $(PARMETIS_LIB)  $(PTHREAD_LIBS) $(OPT_LIBS) $(BOOST_LDFLAGS) $(BOOST_IOSTREAMS_LIB) $(CUDA_LIBS)
 
 noinst_PROGRAMS = cart_dec metis_dec dom_box vector_dist
 cart_dec_SOURCES = CartDecomposition_gen_vtk.cpp ../src/lib/pdata.cpp ../openfpm_devices/src/memory/HeapMemory.cpp ../openfpm_devices/src/memory/PtrMemory.cpp ../openfpm_vcluster/src/VCluster.cpp ../openfpm_devices/src/Memleak_check.cpp
@@ -17,7 +17,7 @@ dom_box_CFLAGS = $(CUDA_CFLAGS)
 dom_box_LDADD = $(LINKLIBS)
 
 vector_dist_SOURCES = vector.cpp ../openfpm_devices/src/memory/HeapMemory.cpp ../openfpm_vcluster/src/VCluster.cpp ../openfpm_devices/src/memory/PtrMemory.cpp
-vector_dist_CXXFLAGS = $(PETSC_INCLUDE) $(PARMETIS_INCLUDE) $(METIS_INCLUDE) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(HDF5_CPPFLAGS) $(BOOST_CPPFLAGS) -I../src -Wno-unused-function -Wno-unused-local-typedefs
+vector_dist_CXXFLAGS = $(LIBHILBERT_INCLUDE) $(PETSC_INCLUDE) $(PARMETIS_INCLUDE) $(METIS_INCLUDE) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(HDF5_CPPFLAGS) $(BOOST_CPPFLAGS) -I../src -Wno-unused-function -Wno-unused-local-typedefs
 vector_dist_CFLAGS = $(CUDA_CFLAGS)
 vector_dist_LDADD = $(LINKLIBS) -lparmetis -lmetis
 

m4/ax_libhilbert.m4

+# ===========================================================================
+#       
+# ===========================================================================
+#
+# SYNOPSIS
+#
+#   AX_LIB_HILBERT()
+#
+# DESCRIPTION
+#
+#   This macro provides tests of the availability of libHilbert library.
+#
+#
+#   The macro adds a --with-libhilbert option accepting one of three values:
+#
+#     no   - do not check for the libhilbert library.
+#     yes  - do check for libhilbert library in standard locations.
+#     path - complete path to the libhilbert library.
+#
+#   If libhilbert is successfully found, this macro calls
+#
+#     AC_SUBST(LIBHILBERT_INCLUDE)
+#     AC_SUBST(LIBHILBERT_LIB)
+#     AC_DEFINE(HAVE_LIBHILBERT)
+#
+#   and sets with_libhilbert="yes"
+#
+#   If libhilbert is disabled or not found, this macros sets with_libhilbert="no"
+#
+#   Your configuration script can test $with_libhilbert to take any further
+#   actions. LIBHILBERT_{INCLUDE,LIB} may be used when building with C or C++.
+#
+#   To use the macro, one would code one of the following in "configure.ac"
+#   before AC_OUTPUT:
+#
+#     1) dnl Check for libhilbert support
+#        AX_LIB_HILBERT()
+#
+#   One could test $with_libhilbert for the outcome or display it as follows
+#
+#     echo "libhilbert support:  $with_libhilbert"
+#
+#   You could also for example, override the default CC in "configure.ac"
+#
+# LICENSE
+#
+#   Copyright (c) 2009 Timothy Brown <tbrown@freeshell.org>
+#   Copyright (c) 2010 Rhys Ulerich <rhys.ulerich@gmail.com>
+#
+#   Copying and distribution of this file, with or without modification, are
+#   permitted in any medium without royalty provided the copyright notice
+#   and this notice are preserved. This file is offered as-is, without any
+#   warranty.
+
+#serial 12
+
+AC_DEFUN([AX_LIB_HILBERT], [
+        AC_MSG_CHECKING(for libhilbert library)
+        AC_REQUIRE([AC_PROG_CC])
+        #
+        # User hints...
+        #
+        AC_ARG_VAR([LIBHILBERT], [Libhilbert library location])
+        AC_ARG_WITH([libhilbert],
+                [AC_HELP_STRING([--with-libhilbert],
+                [user defined path to LIBHILBERT library])],
+                [
+                        if test -n "$LIBHILBERT" ; then
+                                AC_MSG_RESULT(yes)
+                                with_libhilbert=$LIBHILBERT
+                        elif test "$withval" != no ; then
+                                AC_MSG_RESULT(yes)
+                                with_libhilbert=$withval
+                        else
+                                AC_MSG_RESULT(no)
+                        fi
+                ],
+                [
+                        if test -n "$PETSC" ; then
+                                with_libhilbert=$PETSC
+                                AC_MSG_RESULT(yes)
+                        else
+                                with_petsc=/usr
+                                if test ! -f "$with_libhilbert/include/hilbertKey.h" ; then
+                                        with_libhilbert=/usr/local
+                                        if test ! -f "$with_libhilbert/include/hilbertKey.h" ; then
+                                                with_libhilbert=""
+                                                AC_MSG_RESULT(failed)
+                                        else
+                                                AC_MSG_RESULT(yes)
+                                        fi
+                                else
+                                        AC_MSG_RESULT(yes)
+                                fi
+                        fi
+                ])
+        #
+        # locate LIBHILBERT library
+        #
+
+                if test -n "$with_libhilbert" ; then
+                        old_CC=$CC
+                        old_CFLAGS=$CFLAGS
+                        old_LDFLAGS=$LDFLAGS
+                        CFLAGS="-I$with_libhilbert/include "
+                        LDFLAGS="-L$with_libhilbert/lib "
+			CC=$CXX
+
+                        AC_LANG_SAVE
+                        AC_LANG_C
+
+                        AC_CHECK_HEADER([hilbertKey.h],libhilbert_h=yes,## Copy LIB and include in the target directory
+AC_MSG_WARN([could not find header file hilbertKey.h]))
+                        AC_CHECK_LIB([libhilbert],[getIntCoordFromHKey],libhilbert_lib=yes,AC_MSG_WARN([could not find libhilbert]))
+                        
+                        AC_LANG_RESTORE
+
+                        CFLAGS=$old_CFLAGS
+                        LDFLAGS=$old_LDFLAGS
+                        CC=$old_CC
+
+                        AC_MSG_CHECKING(LIBHILBERT in $with_libhilbert)
+                        if test x"$libhilbert_lib" = x"yes" -a x"$libhilbert_h" = x"yes" ; then
+                                AC_SUBST(LIBHILBERT_INCLUDE, [-I$with_libhilbert/include])
+                                AC_SUBST(LIBHILBERT_LIB, ["-L$with_libhilbert/lib -llibhilbert"])
+                                AC_MSG_RESULT(ok)
+ 				AC_DEFINE(HAVE_LIBHILBERT,1,[Define if you have LIBHILBERT library])
+                        else
+                                AC_MSG_RESULT(failed)
+                        fi
+                fi
+                #
+                #
+                #
+                if test x = x"$LIBHILBERT_LIB" ; then
+                        ifelse([$2],,[],[$2])
+                        :
+                else
+                        ifelse([$1],,[],[$1])
+                        :
+                fi
+        ])dnl AX_LIB_HILBERT
+        

openfpm_data @ c78ac493

-Subproject commit aaacba08d3306b4f7c22198ae767481e022276f8
+Subproject commit c78ac493019f2b3bc96a43bcced5a031f4f4717d

openfpm_devices @ aef59d58

-Subproject commit 5868264de4c5d9a684b48f492efbfd26798f1d18
+Subproject commit aef59d58fe1e8958dd09da9672fa673063ab970e

openfpm_io @ ffcab9ac

-Subproject commit ca2becb045ef96fcf6287f8ef5da2314248bcb66
+Subproject commit ffcab9ac1a89b0f7e017146ac24fab521c50bb62

src/Makefile.am

-LINKLIBS = $(METIS_LIB) $(PTHREAD_LIBS) $(OPT_LIBS) $(BOOST_LDFLAGS) $(BOOST_IOSTREAMS_LIB) $(CUDA_LIBS) $(PETSC_LIB) $(HDF5_LDFLAGS)  $(HDF5_LIBS) $(PARMETIS_LIB) $(BOOST_UNIT_TEST_FRAMEWORK_LIB) $(BOOST_CHRONO_LIB) $(BOOST_TIMER_LIB) $(BOOST_SYSTEM_LIB)
+LINKLIBS = $(LIBHILBERT_LIB)  $(METIS_LIB) $(PTHREAD_LIBS) $(OPT_LIBS) $(BOOST_LDFLAGS) $(BOOST_IOSTREAMS_LIB) $(CUDA_LIBS) $(PETSC_LIB) $(HDF5_LDFLAGS)  $(HDF5_LIBS) $(PARMETIS_LIB) $(BOOST_UNIT_TEST_FRAMEWORK_LIB) $(BOOST_CHRONO_LIB) $(BOOST_TIMER_LIB) $(BOOST_SYSTEM_LIB)
 
 noinst_PROGRAMS = pdata
 pdata_SOURCES = main.cpp Grid/grid_dist_id_unit_test.cpp  lib/pdata.cpp test_multiple_o.cpp ../openfpm_devices/src/memory/HeapMemory.cpp ../openfpm_devices/src/memory/PtrMemory.cpp ../openfpm_vcluster/src/VCluster.cpp ../openfpm_devices/src/Memleak_check.cpp
-pdata_CXXFLAGS = $(PETSC_INCLUDE) $(HDF5_CPPFLAGS) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(PARMETIS_INCLUDE) $(METIS_INCLUDE) $(BOOST_CPPFLAGS) $(H5PART_INCLUDE) -DPARALLEL_IO  -Wno-unused-local-typedefs
+pdata_CXXFLAGS = $(LIBHILBERT_INCLUDE) $(PETSC_INCLUDE) $(HDF5_CPPFLAGS) $(CUDA_CFLAGS) $(INCLUDES_PATH) $(PARMETIS_INCLUDE) $(METIS_INCLUDE) $(BOOST_CPPFLAGS) $(H5PART_INCLUDE) -DPARALLEL_IO  -Wno-unused-local-typedefs
 pdata_CFLAGS = $(CUDA_CFLAGS)
-pdata_LDADD = $(LINKLIBS) -lparmetis -lmetis -L/usr/local/libhilbert/lib -lhilbert
+pdata_LDADD = $(LINKLIBS) -lparmetis -lmetis
 nobase_include_HEADERS = Decomposition/CartDecomposition.hpp Decomposition/common.hpp Decomposition/Decomposition.hpp  Decomposition/ie_ghost.hpp \
          Decomposition/nn_processor.hpp Decomposition/ie_loc_ghost.hpp Decomposition/ORB.hpp \
          Graph/CartesianGraphFactory.hpp \