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Commit 2e0e1449 authored by Krzysztof Gonciarz's avatar Krzysztof Gonciarz
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# Exact stochastic simulation of intracellular transport
## Description
A C++ implementation of the hybrid continuous-discrete stochastic simulation algorithm for intracellular transport.
The code was written by Jo Helmuth as part of his PhD project at the MOSAIC Group:
*J. A. Helmuth.* Computational Methods for Analyzing and Simulating Intra-Cellular Transport Processes. PhD thesis, Diss. ETH No. 19190, ETH Zürich, 2010. ([PDF](https://sbalzarini-lab.org/docs/Helmuth2010a.pdf))
## Citation
The method and algorithm implemented in this toolbox are described and benchmarked in the following publication:
*J. A. Helmuth, S. Reboux, and I. F. Sbalzarini.*
Exact stochastic simulations of intra-cellular transport by mechanically coupled molecular motors. J. Comput. Sci., doi: 10.1016/j.jocs.2011.08.006, 2011. ([PDF](https://sbalzarini-lab.org/docs/Helmuth2011.pdf))
**In order to ensure financial support for our project and allow further development of this software, please cite above publications in all your documents and manuscripts that made use of this software. Thanks a lot!**
## Important note
This software package is not maintained or supported any more.
## Disclaimer
*IN NO EVENT SHALL THE MOSAIC GROUP BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF THE USE OF THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF THE MOSAIC GROUP HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. THE MOSAIC GROUP SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE SOFTWARE PROVIDED HEREUNDER IS ON AN "AS IS" BASIS, AND THE MOSAIC GROUP HAS NO OBLIGATIONS TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS.*
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