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lecture_applied_bioimage_analysis_2020
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rhaase
lecture_applied_bioimage_analysis_2020
Commits
2168a4ee
Commit
2168a4ee
authored
Jun 17, 2020
by
rhaase
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updated Otsu-analysis on ImageJ: Removed fill-holes command
parent
34b8bd09
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10_Method_comparison/exercise_solution/Otsu_Method_Comparison.ipynb
...comparison/exercise_solution/Otsu_Method_Comparison.ipynb
+35
-35
10_Method_comparison/exercise_solution/analyse_banana.ijm
10_Method_comparison/exercise_solution/analyse_banana.ijm
+1
-1
10_Method_comparison/exercise_solution/otsu_imagej.csv
10_Method_comparison/exercise_solution/otsu_imagej.csv
+21
-21
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10_Method_comparison/exercise_solution/Otsu_Method_Comparison.ipynb
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2168a4ee
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10_Method_comparison/exercise_solution/analyse_banana.ijm
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2168a4ee
...
...
@@ -26,7 +26,7 @@ for (i = 0; i < lengthOf(filelist); i++) {
setAutoThreshold("Otsu dark");
setOption("BlackBackground", true);
run("Convert to Mask");
run("Fill Holes");
//
run("Fill Holes");
// measure the position of this one single object
run("Set Measurements...", "area redirect=None decimal=3");
...
...
10_Method_comparison/exercise_solution/otsu_imagej.csv
View file @
2168a4ee
,Area
1,197.
906
2,468.
903
1,197.
601
2,468.
292
3,780.640
4,988.
922
5,1
100.159
6,11
52.649
7,117
8.131
8,118
9.575
9,11
97.052
10,11
97.66
2
11,1
210.632
12,1
222.534
13,12
41.913
14,12
66.785
15,12
92.419
16,13
18.512
17,13
40.637
18,13
71.918
19,1373.
596
20,131
5.308
21,117
2.638
4,988.
770
5,1
099.396
6,11
48.682
7,117
2.485
8,118
3.167
9,11
88.507
10,11
83.47
2
11,1
187.134
12,1
189.117
13,12
05.750
14,12
38.708
15,12
75.330
16,13
07.678
17,13
31.329
18,13
69.019
19,1373.
444
20,131
3.019
21,117
1.265
22,915.527
23,58
6.243
23,58
4.717
24,222.931
25,127.411
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