Commit 2168a4ee authored by rhaase's avatar rhaase

updated Otsu-analysis on ImageJ: Removed fill-holes command

parent 34b8bd09
......@@ -26,7 +26,7 @@ for (i = 0; i < lengthOf(filelist); i++) {
setAutoThreshold("Otsu dark");
setOption("BlackBackground", true);
run("Convert to Mask");
run("Fill Holes");
//run("Fill Holes");
// measure the position of this one single object
run("Set Measurements...", "area redirect=None decimal=3");
......
,Area
1,197.906
2,468.903
1,197.601
2,468.292
3,780.640
4,988.922
5,1100.159
6,1152.649
7,1178.131
8,1189.575
9,1197.052
10,1197.662
11,1210.632
12,1222.534
13,1241.913
14,1266.785
15,1292.419
16,1318.512
17,1340.637
18,1371.918
19,1373.596
20,1315.308
21,1172.638
4,988.770
5,1099.396
6,1148.682
7,1172.485
8,1183.167
9,1188.507
10,1183.472
11,1187.134
12,1189.117
13,1205.750
14,1238.708
15,1275.330
16,1307.678
17,1331.329
18,1369.019
19,1373.444
20,1313.019
21,1171.265
22,915.527
23,586.243
23,584.717
24,222.931
25,127.411
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