added scripts and yaml files for the comparison with results from the study by Yu et al. 2021
Showing
- sc_RNASeq/README.md 14 additions, 7 deletionssc_RNASeq/README.md
- sc_RNASeq/scripts/1_data_preparation.R 0 additions, 0 deletionssc_RNASeq/scripts/1_data_preparation.R
- sc_RNASeq/scripts/1_sc_quality_check.R 0 additions, 0 deletionssc_RNASeq/scripts/1_sc_quality_check.R
- sc_RNASeq/scripts/2_batch_script_velocyto.sh 0 additions, 0 deletionssc_RNASeq/scripts/2_batch_script_velocyto.sh
- sc_RNASeq/scripts/2_run_velocyto.sh 0 additions, 0 deletionssc_RNASeq/scripts/2_run_velocyto.sh
- sc_RNASeq/scripts/3_sc_clustering_scanpy_original.ipynb 0 additions, 0 deletionssc_RNASeq/scripts/3_sc_clustering_scanpy_original.ipynb
- sc_RNASeq/scripts/3_sc_trajectory_scvelo_dynamical.ipynb 0 additions, 0 deletionssc_RNASeq/scripts/3_sc_trajectory_scvelo_dynamical.ipynb
- sc_RNASeq/scripts/4_AnalyzeData.m 0 additions, 0 deletionssc_RNASeq/scripts/4_AnalyzeData.m
- sc_RNASeq/scripts/5_integrate_datasets.R 262 additions, 0 deletionssc_RNASeq/scripts/5_integrate_datasets.R
- sc_RNASeq/scripts/5_sc_clustering_scanpy_OMIX236.ipynb 11646 additions, 0 deletionssc_RNASeq/scripts/5_sc_clustering_scanpy_OMIX236.ipynb
- sc_RNASeq/yaml_files/conda_sc_python_notebooks.yml 5 additions, 2 deletionssc_RNASeq/yaml_files/conda_sc_python_notebooks.yml
- sc_RNASeq/yaml_files/python3.7_R4.1.yml 320 additions, 0 deletionssc_RNASeq/yaml_files/python3.7_R4.1.yml
Loading
Please register or sign in to comment