Surface manager

The surface manager is a Fiji plugin allowing to outline regions in a 3D in a slice by slice way. This may mean a 3D region in space, but also a shifting and reshaping region in 2D over time.

Installation instructions

To install the surface manager to your Fiji installation, activate the Update site

http://sites.imagej.net/Egg_Chamber_Dynamics

in your Fiji installation. You can get more information on update sites here.

Developer instructions

If you you want to build this plugin from source, clone this repository and use maven to build and install it:

mvn install

The entry-point for the Surface manager is the SurfaceManagerPlugin class.