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tothpetroczylab
Picnic
Commits
3e497717
Commit
3e497717
authored
9 months ago
by
Maxim Scheremetjew
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release: Release preparation version 1.0.0-beta3.
parent
d6919460
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1.0.0b3
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1 merge request
!33
Merge branch develop into main (release preparation)
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README.md
+9
-7
9 additions, 7 deletions
README.md
setup.py
+2
-1
2 additions, 1 deletion
setup.py
with
11 additions
and
8 deletions
README.md
+
9
−
7
View file @
3e497717
...
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@@ -24,7 +24,7 @@ A binary installer for the latest released version is available at the Python Pa
## Requirements
*
Python version
3.1
0+
*
Python version
s >=3.9,<
3.1
2
*
Download and unpack IUPred2A
*
Add IUPred2A to PYTHONPATH
*
Download and unpack STRIDE
...
...
@@ -61,12 +61,14 @@ $ export PYTHONPATH="$PWD"
## PICNIC is available on PyPI
PICNIC officially supports Python versions >=3.9,<3.12.
```
shell
$
python
-m
pip
install
picnic_bio
$
python3
--version
Python 3.11.5
$
python3
-m
pip
install
picnic_bio
```
PICNIC officially supports Python versions >=3.9 and <=3.11.
## PICNIC is also installable from source
```
shell
...
...
@@ -78,8 +80,8 @@ Once you have a copy of the source, you can embed it in your own Python package,
```
shell
$
cd
picnic
$
python3
-m
venv picnic-env
$source
picnic-env/bin/activate
(
v
env
)
$
python
-m
pip
install
.
$
source
picnic-env/bin/activate
(
picnic-
env
)
$
python
-m
pip
install
.
```
## How to install PICNIC using Conda?
...
...
@@ -95,7 +97,7 @@ We have documented how to get around the catboost installation issue.
```
shell
$
conda config
--add
channels conda-forge
$
conda config
--set
channel_priority strict
$
conda create
-n
myenv
python
=[
3.10, 3.11]
catboost
=
1.2.2
$
conda create
-n
myenv
python
=[
3.9,
3.10, 3.11]
catboost
=
1.2.2
$
conda activate myenv
(
myenv
)
$
python
-m
pip
install
picnic_bio
```
...
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setup.py
+
2
−
1
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3e497717
...
...
@@ -9,7 +9,7 @@ with open("README.md", "r", encoding="utf-8") as fh:
setuptools
.
setup
(
name
=
"
picnic-bio
"
,
version
=
"
1.0.0-beta
2
"
,
version
=
"
1.0.0-beta
3
"
,
author
=
"
Anna Hadarovich <hadarovi@mpi-cbg.de>, Maxim Scheremetjew <schereme@mpi-cbg.de>
"
,
author_email
=
"
picnic@cd-code.org
"
,
description
=
"
PICNIC (Proteins Involved in CoNdensates In Cells) is a machine learning-based model that predicts proteins involved in biomolecular condensates.
"
,
...
...
@@ -31,6 +31,7 @@ setuptools.setup(
"
Programming Language :: Python
"
,
"
Programming Language :: Python :: 3
"
,
"
Programming Language :: Python :: 3 :: Only
"
,
"
Programming Language :: Python :: 3.9
"
,
"
Programming Language :: Python :: 3.10
"
,
"
Programming Language :: Python :: 3.11
"
,
"
Operating System :: Unix
"
,
...
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