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Commit 3e497717 authored by Maxim Scheremetjew's avatar Maxim Scheremetjew
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release: Release preparation version 1.0.0-beta3.

parent d6919460
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Tags 1.0.0b3
1 merge request!33Merge branch develop into main (release preparation)
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in 2 minutes and 35 seconds
......@@ -24,7 +24,7 @@ A binary installer for the latest released version is available at the Python Pa
## Requirements
* Python version 3.10+
* Python versions >=3.9,<3.12
* Download and unpack IUPred2A
* Add IUPred2A to PYTHONPATH
* Download and unpack STRIDE
......@@ -61,12 +61,14 @@ $ export PYTHONPATH="$PWD"
## PICNIC is available on PyPI
PICNIC officially supports Python versions >=3.9,<3.12.
```shell
$ python -m pip install picnic_bio
$ python3 --version
Python 3.11.5
$ python3 -m pip install picnic_bio
```
PICNIC officially supports Python versions >=3.9 and <=3.11.
## PICNIC is also installable from source
```shell
......@@ -78,8 +80,8 @@ Once you have a copy of the source, you can embed it in your own Python package,
```shell
$ cd picnic
$ python3 -m venv picnic-env
$source picnic-env/bin/activate
(venv) $ python -m pip install .
$ source picnic-env/bin/activate
(picnic-env) $ python -m pip install .
```
## How to install PICNIC using Conda?
......@@ -95,7 +97,7 @@ We have documented how to get around the catboost installation issue.
```shell
$ conda config --add channels conda-forge
$ conda config --set channel_priority strict
$ conda create -n myenv python=[3.10, 3.11] catboost=1.2.2
$ conda create -n myenv python=[3.9, 3.10, 3.11] catboost=1.2.2
$ conda activate myenv
(myenv) $ python -m pip install picnic_bio
```
......
......@@ -9,7 +9,7 @@ with open("README.md", "r", encoding="utf-8") as fh:
setuptools.setup(
name="picnic-bio",
version="1.0.0-beta2",
version="1.0.0-beta3",
author="Anna Hadarovich <hadarovi@mpi-cbg.de>, Maxim Scheremetjew <schereme@mpi-cbg.de>",
author_email="picnic@cd-code.org",
description="PICNIC (Proteins Involved in CoNdensates In Cells) is a machine learning-based model that predicts proteins involved in biomolecular condensates.",
......@@ -31,6 +31,7 @@ setuptools.setup(
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3 :: Only",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Operating System :: Unix",
......
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