todo.txt

- cuffdbs change dramatically in size if gtf is provided when building them, but what impact does it have on the results

- Also try to remove RNA PCR Primer enrichment. Currently we just remove index and universal adapter


1) evaluate if trimmoatic is the better trimmer (with respect to cutadapt)
- also consider to use contamination list from fastqc for trimming (see https://www.biostars.org/p/15753/)