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Commit 0445369e authored by Holger Brandl's avatar Holger Brandl
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adjusted star to use jl

parent 7965e302
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dge_workflow/star_align.sh
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...@@ -89,6 +89,8 @@ fi ...@@ -89,6 +89,8 @@ fi
echo "running STAR using igenome '${igenome}' for the following files" echo "running STAR using igenome '${igenome}' for the following files"
rm .starjobs
#fastqFiles=$(ls $baseDir/treps_pooled/*fastq.gz) #fastqFiles=$(ls $baseDir/treps_pooled/*fastq.gz)
for fastqFile in $fastqFiles ; do for fastqFile in $fastqFiles ; do
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