Skip to content
Snippets Groups Projects
Commit 089f52cb authored by Holger Brandl's avatar Holger Brandl
Browse files

fixed dependencies

parent 68beea46
No related branches found
No related tags found
No related merge requests found
#!/usr/bin/env kscript
//DEPS com.offbytwo:docopt:0.6.0.20150202 de.mpicbg.scicomp:joblist:0.6-SNAPSHOT de.mpicbg.scicomp.bioinfo:kutils:0.1-SNAPSHOT
//DEPS com.offbytwo:docopt:0.6.0.20150202 de.mpicbg.scicomp:joblist:0.6 de.mpicbg.scicomp.bioinfo:kutils:0.1-SNAPSHOT
// add docopts to local m2 index
......@@ -101,7 +101,7 @@ for (fastqFile in fastqFiles) {
// todo provide proper walltime here
// slurm memory limit https://rc.fas.harvard.edu/resources/documentation/slurm-memory/
// sacct -o MaxRSS -j JOBID
jl.run(JobConfiguration(cmd, "star__${fastqBaseName}", "5:00:00", "", 5, "--mem 40000", better.files.File(File(".").toPath())))
jl.run(JobConfiguration(cmd, "star__${fastqBaseName}", "", "medium", 5, 0, "", better.files.File(File(".").toPath())))
}
......
......@@ -16,8 +16,8 @@
<dependency>
<groupId>de.mpicbg.scicomp</groupId>
<artifactId>joblist_2.11</artifactId>
<version>0.6-SNAPSHOT</version>
<artifactId>joblist</artifactId>
<version>0.6</version>
</dependency>
<dependency>
......
0% Loading or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment