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Commit 09caee9d authored by Holger Brandl's avatar Holger Brandl
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cont deseq workflow

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dge_workflow/featcounts_deseq.R
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...@@ -352,4 +352,4 @@ save(geneLists, file=".enrGeneLists.RData") ...@@ -352,4 +352,4 @@ save(geneLists, file=".enrGeneLists.RData")
opts_knit$set(root.dir = getwd()) opts_knit$set(root.dir = getwd())
commandArgs <- function(x) c(paste("--overlay_expr_data ", count_matrix_file, " enrGeneLists.RData")) commandArgs <- function(x) c(paste("--overlay_expr_data ", count_matrix_file, " enrGeneLists.RData"))
#source("/home/brandl/mnt/mack/bioinfo/scripts/ngs_tools/dev/common/david_enrichment.R") #source("/home/brandl/mnt/mack/bioinfo/scripts/ngs_tools/dev/common/david_enrichment.R")
##+ child='/home/brandl/mnt/mack/bioinfo/scripts/ngs_tools/dev/common/david_enrichment.Rmd' # child='/home/brandl/mnt/mack/bioinfo/scripts/ngs_tools/dev/common/david_enrichment.Rmd'
dge_workflow/testdata/featcounts_deseq/deseq_workflow_example.md
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View file @ 09caee9d
DESeq Tool Integeratin Example
========
Run on bioinfo
``` ```
NGS_TOOLS=~/mnt/mack/bioinfo/scripts/ngs_tools/dev/ NGS_TOOLS=~/mnt/mack/bioinfo/scripts/ngs_tools/dev/
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