added bioinfo-srv1 compatibility

dge_workflow/dge_utils.sh

@@ -2,13 +2,18 @@
 ## http://blog.joncairns.com/2013/08/what-you-need-to-know-about-bash-functions/
 
 ## define common binaries
-## todo generify this to work on bioinfo and furiosa as well
-export PATH=/projects/bioinfo/holger/bin/bowtie2-2.2.5:$PATH
-export PATH=/projects/bioinfo/holger/bin/deepTools-2.2.2/bin:$PATH
-export PATH=/projects/bioinfo/holger/bin/FastQC_0.11.2:$PATH
-export PATH=/projects/bioinfo/holger/bin/bedtools2-2.25.0/bin/:$PATH
-export PATH=/projects/bioinfo/holger/bin/samtools-1.3:$PATH
-export PATH=/home/brandl/bin/STAR-2.5.1b/source:$PATH
+if [ $(hostname) == "bioinformatics-srv1" ]; then
+    export BIO_BIN_BASE="/local/home/brandl/bin"
+else
+    export BIO_BIN_BASE="/projects/bioinfo/holger/bin"
+fi
+
+export PATH=${BIO_BIN_BASE}/bowtie2-2.2.5:$PATH
+export PATH=${BIO_BIN_BASE}/deepTools-2.2.2/bin:$PATH
+export PATH=${BIO_BIN_BASE}/FastQC_0.11.2:$PATH
+export PATH=${BIO_BIN_BASE}/bedtools2-2.25.0/bin/:$PATH
+export PATH=${BIO_BIN_BASE}/samtools-1.3:$PATH
+export PATH=${BIO_BIN_BASE}/STAR-2.5.1b/source:$PATH
 #export PATH=/home/brandl/bin/subread-1.4.6-p3-Linux-x86_64/bin:$PATH