updated rnaseq template

dge_workflow/dge_star_template.sh

-# todo define project name
-export project=<<PROJECTNAME>>
+# TODO  define project name
+export project="TODO  define project name"
 # screen -R ${project}
 
 
 ## madmax
-if [ -n "$LSF_SERVERDIR" ]; then
+if [ "$HOSTNAME"=="falcon1" ]; then
     export baseDir="/projects/bioinfo/holger/projects/${project}"
     export PROJECT_SCRIPTS="/projects/bioinfo/holger/scripts/${project}"
     export NGS_TOOLS="/projects/bioinfo/scripts/ngs_tools/dev"
@@ -12,10 +12,9 @@ fi
 
 ## bioinfo
 if [ $(hostname) == "bioinformatics-srv1" ]; then
-    #<<<todo define paths on bioinfo>>>
-    #export baseDir=/home/brandl/mnt/chip-seq_study/ChIPSeq_March_2015/data
-    #export PROJECT_SCRIPTS=/home/brandl/mnt/chip-seq_study/ChIPSeq_March_2015/scripts
-    export NGS_TOOLS="/home/brandl/mnt/mack/bioinfo/scripts/ngs_tools/dev"
+    export baseDir=/net/mack/lustre/projects/bioinfo/holger/projects/${project}
+    export PROJECT_SCRIPTS==/net/mack/lustre/projects/bioinfo/holger/scripts/${project}
+    export NGS_TOOLS=/net/mack/lustre/projects/bioinfo/scripts/ngs_tools/dev
 fi
 
 
@@ -23,9 +22,9 @@ source ${NGS_TOOLS}/dge_workflow/dge_utils.sh
 export PATH=${NGS_TOOLS}/dge_workflow:$PATH
 
 
-## todo define igenome to be used
+## TODO define igenome to be used
 ## igenome=/projects/bioinfo/igenomes/Canis_familiaris/Ensembl/CanFam3.1
-igenome=<<<<TBD>>>>
+#igenome=<<<<TBD>>>>
 
 ########################################################################################################################
 ### Fetch the data