Commit 6f0748b9 authored by Holger Brandl's avatar Holger Brandl

replaced dropbox links to core_* with versioned github links

parent 3ddf07d2
......@@ -108,8 +108,8 @@ done
wait
echo '
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.5/R/core_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.5/R/ggplot_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.9/R/core_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.9/R/ggplot_commons.R")
libSizes <- read.delim("algn_counts.txt", header=F) %>% set_names(c("library_size", "sample"))
libSizes %>% ggplot(aes(sample, library_size)) +
......
......@@ -4,8 +4,8 @@
## Note This script is supposed to be knitr::spin'ed
devtools::source_url("https://dl.dropboxusercontent.com/u/113630701/datautils/R/core_commons.R")
devtools::source_url("https://dl.dropboxusercontent.com/u/113630701/datautils/R/ggplot_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.9/R/core_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.9/R/ggplot_commons.R")
require(knitr)
## can we access variables from the parent spin.R process?
......
......@@ -39,9 +39,9 @@ if(is.na(file.info(cuffdb_directory)$isdir)){
}
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.5/R/core_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.5/R/ggplot_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.5/R/bio/diffex_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.9/R/core_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.9/R/ggplot_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.9/R/bio/diffex_commons.R")
require(cummeRbund)
......
......@@ -2,7 +2,7 @@
## http://blog.joncairns.com/2013/08/what-you-need-to-know-about-bash-functions/
## load lsf helpers
source <(curl https://dl.dropboxusercontent.com/u/113630701/datautils/bash/lsf_utils.sh 2>&1 2>/dev/null)
source <(curl https://raw.githubusercontent.com/holgerbrandl/datautils/v1.9/bash/lsf_utils.sh 2>&1 2>/dev/null)
## enable snippet spinning
source <(curl https://raw.githubusercontent.com/holgerbrandl/datautils/master/R/spinr/spin_utils.sh 2>&1 2>/dev/null)
......
......@@ -4,8 +4,8 @@
## Note This script is supposed to be knitr::spin'ed
devtools::source_url("https://dl.dropboxusercontent.com/u/113630701/datautils/R/core_commons.R")
devtools::source_url("https://dl.dropboxusercontent.com/u/113630701/datautils/R/ggplot_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.9/R/core_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.9/R/ggplot_commons.R")
## can we access variables from the parent spin.R process?
#echo("rscript is ", r_script)
......
......@@ -26,8 +26,8 @@ if(is.na(file.info(baseDir)$isdir)){
stop(paste("base directory", baseDir, "does not exist"))
}
devtools::source_url("https://dl.dropboxusercontent.com/u/113630701/datautils/R/core_commons.R")
devtools::source_url("https://dl.dropboxusercontent.com/u/113630701/datautils/R/ggplot_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.9/R/core_commons.R")
devtools::source_url("https://raw.githubusercontent.com/holgerbrandl/datautils/v1.9/R/ggplot_commons.R")
########################################################################################################################
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment