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bioinfo
ngs_tools
Commits
70d319bc
Commit
70d319bc
authored
8 years ago
by
Holger Brandl
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added enrichr wrapper for R
parent
49849422
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tool_setup.sh
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70d319bc
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@@ -107,6 +107,22 @@ wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/Tools/PfamScan.tar.gz
tar
xvf PfamScan.tar.gz
#cpan Moose ## suggested by does not seem to be required, see
## blat
#https://genome.ucsc.edu/goldenpath/help/blatSpec.html
## parallel blat
# https://github.com/icebert/pblat
\ No newline at end of file
# https://github.com/icebert/pblat
## enrichr API https://github.com/snewhouse/enrichr-api
cd
~/bin
git clone https://github.com/snewhouse/enrichr-api
export
PATH
=
~/bin/enrichr-api:
${
PATH
}
#change interpreter to python 3 in
nano enrichr-api/query_enrichr_py3.py
export
PATH
=
~/bin/enrichr-api:
${
PATH
}
;
query_enrichr_py3.py /tmp/RtmpGt5uEk/file83c2615400f3.lst
'batch enrichment'
ENCODE_TF_ChIP /tmp/RtmpGt5uEk/file83c247b2a3d2.txt
\ No newline at end of file
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