Commit 70d319bc authored by Holger Brandl's avatar Holger Brandl
Browse files

added enrichr wrapper for R

parent 49849422
......@@ -107,6 +107,22 @@ wget ftp://ftp.ebi.ac.uk/pub/databases/Pfam/Tools/PfamScan.tar.gz
tar xvf PfamScan.tar.gz
#cpan Moose ## suggested by does not seem to be required, see
## blat
#https://genome.ucsc.edu/goldenpath/help/blatSpec.html
## parallel blat
# https://github.com/icebert/pblat
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# https://github.com/icebert/pblat
## enrichr API https://github.com/snewhouse/enrichr-api
cd ~/bin
git clone https://github.com/snewhouse/enrichr-api
export PATH=~/bin/enrichr-api:${PATH}
#change interpreter to python 3 in
nano enrichr-api/query_enrichr_py3.py
export PATH=~/bin/enrichr-api:${PATH};
query_enrichr_py3.py /tmp/RtmpGt5uEk/file83c2615400f3.lst 'batch enrichment' ENCODE_TF_ChIP /tmp/RtmpGt5uEk/file83c247b2a3d2.txt
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