removed no longer needed rend.R args quoting

dge_workflow/dge_star_template.sh

@@ -121,13 +121,13 @@ rend.R -e $NGS_TOOLS/dge_workflow/featcounts_deseq.R ../mapped/star_counts_matri
 #unpolarised,liver_polar_stage3
 #" | csvformat -T  > contrasts.txt
 #
-#rend.R -e $NGS_TOOLS/dge_workflow/featcounts_deseq.R "\"--contrasts contrasts.txt ../alignments/star_counts_matrix.txt\""  2>&1  | tee featcounts_deseq.log
+#rend.R -e $NGS_TOOLS/dge_workflow/featcounts_deseq.R --contrasts contrasts.txt ../alignments/star_counts_matrix.txt  2>&1  | tee featcounts_deseq.log
 
 
 ## Term enrichment
 mcdir $baseDir/dge_analysis/dge_enrichment_analysis
 $NGS_TOOLS/common/cp_enrichment.R --overlay_expr_data ../plot_score_matrix.txt ../degs_by_contrast.txt contrast
-rend.R -e $NGS_TOOLS/common/cp_enrichment.R "\"--overlay_expr_data ../plot_score_matrix.txt ../degs_by_contrast.txt contrast\""
+rend.R -e $NGS_TOOLS/common/cp_enrichment.R --overlay_expr_data ../plot_score_matrix.txt ../degs_by_contrast.txt contrast
 
 
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