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Commit 8f5633ac authored by Holger Brandl's avatar Holger Brandl
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fixed fc analysis for replicated scheme

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dge_workflow/featcounts_deseq.R
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...@@ -73,7 +73,7 @@ genesAfter <- nrow(countMatrix) ...@@ -73,7 +73,7 @@ genesAfter <- nrow(countMatrix)
# TODO add general info about the deseq process/model here # TODO add general info about the deseq process/model here
get_sample_from_replicate <- function(repName) str_match(repName, "(.*)_[0-9]{1}$")[,2] get_sample_from_replicate <- function(repName) str_match(repName, "(.*)_[R]?[0-9]{1}$")[,2]
# Define or load a contrasts matrix # Define or load a contrasts matrix
if(!is.null(contrasts_file)){ if(!is.null(contrasts_file)){
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