converted star index creation to use jl

dge_workflow/dge_utils.sh

@@ -453,7 +453,7 @@ dge_create_star_index(){
     cmd="STAR --runMode genomeGenerate --genomeDir ${star_index} --genomeFastaFiles ${igenome}/Sequence/WholeGenomeFasta/genome.fa --runThreadN 10"
     #eval $cmd
     #STAR --runMode genomeGenerate --genomeDir ${star_index} --genomeFastaFiles ${igenome}/Sequence/Chromosomes/*.fa --runThreadN 10
-    mysub "${project}_star_index" "$cmd" -n 5 -R span[hosts=1] -q medium  | blockScript
+    jl submit --wait -n 5 -q medium 0n "${project}_star_index" "$cmd"
 
     ## prevent further modification
     chmod -w $(dirname ${star_index})