added contig id padding for easier grepping

README.md

@@ -69,17 +69,11 @@ chmod -R -w ../$newVersion
 
  
 
-ToDo
+ToDos
 ====
 
 -   mcdir sourced in?
 
--   use STAR for mapping
-
--   split cuffdiff report into individual tools
-
--   Use featureCounts and DesSeq2 for differential expression analysisf
-
 -   Finish igv\_track\_range.sh
 
 -   Better peak report bioinfo\_templates/chipseq\_workflow/peak\_report.R
@@ -90,3 +84,7 @@ ToDo
     reports above igv-link tables
 
 -   Use proper redmine tracker to evolve the shared codebase
+-   Learn from http://www.bioconductor.org/help/workflows/rnaseqGene/
+
+	* distance matrix using Poisson Distance
+	* pca variance proportions on axis