prepared migration to furiosa

tool_setup.sh

+## DeepTools
+
+cd ~/bin
+git clone https://github.com/dpryan79/pyBigWig.git
+cd pyBigWig
+python setup.py install --user
+
+easy_install-2.7 --user cython
+
+cd ~/bin
+git clone https://github.com/pysam-developers/pysam
+cd pysam
+python setup.py install --user
+
+
 cd ~/bin
 wget -O deepTools-2.2.2.tar.gz  https://github.com/fidelram/deepTools/archive/2.2.2.tar.gz
 tar xvf deepTools-2.2.2.tar.gz
 cd deepTools-2.2.2
 
-python setup.py install --user
\ No newline at end of file
+python setup.py install --user
+
+
+
+cd ~/bin
+
+
+### java tools
+sdk install sbt
+sbt install kotlin
+sbt install gradle
+
+
+
+## bedtools see http://bedtools.readthedocs.org/en/latest/content/installation.html
+wget https://github.com/arq5x/bedtools2/releases/download/v2.25.0/bedtools-2.25.0.tar.gz
+tar -zxvf bedtools-2.25.0.tar.gz
+mv bedtools2 bedtools2-2.25.0
+cd bedtools2-2.25.0
+make