updated kotlin support API dependency

dge_workflow/star_align.kts

 #!/usr/bin/env kscript
-//DEPS de.mpicbg.scicomp:joblist:0.7 de.mpicbg.scicomp:kutils:0.7
+//DEPS de.mpicbg.scicomp.joblist:joblist-kotlin:1.1 de.mpicbg.scicomp:kutils:0.7
 
 
 // add docopts to local m2 index
@@ -7,7 +7,8 @@
 // kotlinc-jvm -classpath $(mvncp org.docopt:docopt:0.6.0-SNAPSHOT)
 
 import de.mpicbg.scicomp.kutils.evalBash
-import joblist.JobConfiguration
+import de.mpicbg.scicomp.kutils.joblist.JobConfig
+import de.mpicbg.scicomp.kutils.joblist.createHtmlReport
 import joblist.JobList
 import org.docopt.Docopt
 import java.io.File
@@ -131,11 +132,9 @@ for (fastqFile in fastqFiles) {
     samtools index ${fastqBaseName}.bam
     """.trimIndent()
 
-    // todo provide proper walltime here
     // slurm memory limit https://rc.fas.harvard.edu/resources/documentation/slurm-memory/
     // sacct -o MaxRSS -j JOBID
-    jl.run(JobConfiguration(cmd, "star__${fastqBaseName}", "10:00", "", 5, 40000, "", better.files.File(File(".").toPath())))
-//    jl.run(JobConfiguration(cmd, "star__${fastqBaseName}", "", "medium", 5, 0, "", better.files.File(File(".").toPath())))
+    jl.run(JobConfig(cmd, "star__${fastqBaseName}", "10:00", "", 5, 40000))
 }
 
 
@@ -145,7 +144,7 @@ jl.waitUntilDone(1000)
 
 
 // http://lampwww.epfl.ch/~michelou/scala/using-scala-from-java.html
-joblist.`package$`.`MODULE$`.ImplJobListUtils(jl).createHtmlReport()
+jl.createHtmlReport()
 
 
 //// estimate expresssion with http://bioinf.wehi.edu.au/featureCounts/