separated star and b1 workflows

dge_workflow/dge_utils.sh

@@ -24,7 +24,6 @@ export PATH=/projects/bioinfo/holger/bin/bedtools2-2.25.0/bin/:$PATH
 export PATH=/projects/bioinfo/holger/bin/samtools-1.3:$PATH
 export PATH=/home/brandl/bin/subread-1.4.6-p3-Linux-x86_64/bin:$PATH
 
-#export PATH=/home/brandl/bin/STAR/STAR-STAR_2.4.1d/source:$PATH
 export PATH=/home/brandl/bin/STAR-2.5.1b/source:$PATH
 
 

dge_workflow/star_align.kts

@@ -20,7 +20,7 @@ import java.io.File
 
 val usage = """
 Use star to align fastq files against a genome
-Usage: star_align.sh [options] <igenome> <fastq_files>...
+Usage: star_align.kts [options] <igenome> <fastq_files>...
 
 Options:
  --gtf <gtfFile>     Custom gtf file instead of igenome bundled copy