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Commit f62254bb authored by Holger Brandl's avatar Holger Brandl
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more logging

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dge_workflow/dge_utils.sh
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...@@ -311,7 +311,7 @@ echo $gtfFile $bamsSplit | tr "," " " | xargs ls -la ...@@ -311,7 +311,7 @@ echo $gtfFile $bamsSplit | tr "," " " | xargs ls -la
#mysub ${project}_cuffdiff "cuffdiff -L aRGm,aRGp,aRG,bRG,IPC,N -o . -p 8 mm10_ensGene_ccds.gtf $amBams $apBams $aBams $bBams $cBams $dBams 2>&1 | tee cuffdiff.log" -q long -n 8 -R span[hosts=1] | blockScript #mysub ${project}_cuffdiff "cuffdiff -L aRGm,aRGp,aRG,bRG,IPC,N -o . -p 8 mm10_ensGene_ccds.gtf $amBams $apBams $aBams $bBams $cBams $dBams 2>&1 | tee cuffdiff.log" -q long -n 8 -R span[hosts=1] | blockScript
cdCmd="cuffdiff -L $labels -o . -p 10 $gtfFile $bamsSplit" cdCmd="cuffdiff -L $labels -o . -p 10 $gtfFile $bamsSplit"
#echo "cmd is: $cdCmd" echo "cuffdiff cmd is: $cdCmd"
# eval $cdCmd # eval $cdCmd
mysub "${project}__cuffdiff" "$cdCmd" -q long -n 4 -R span[hosts=1] | blockScript mysub "${project}__cuffdiff" "$cdCmd" -q long -n 4 -R span[hosts=1] | blockScript
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