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  • belicova_mouse__20170519
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Created with Raphaël 2.2.013Mar92122Dec9123Nov181420Oct18121116Sep15149626Aug244128Jul8765124Jun151432130May2625201917131211109428Apr2012864124Mar2117161582129Feb26252423854129Jan2726158765418Dec1611982112Nov963228Oct2322211918728Sep2221181716151187331Aug2524201930Jul2923211714133130Jun29242319161511109321May20191230Apr2928272316987131Mar2720181716131211109413Feb123228Jan272114619Dec181712118528Nov272624212014misc fixed in rna-seq pipelinecontinued with rna-seq analysis for kirstinupdated rnaseq templateadded samtools v1.3.1gene loss count debugging for liver proteomicsadd blast setupcosmeticsinc dependency versionsinc commons versionincreased jl version for kotlin scriptspolished busco analysisbug fixesupgraded deeptools versioncosmeticsupdated dependenciesadded issue #11 comment; refac of diffex workflow to current Radded enrichr wrapper for Rincreased jl version to 0.7cont. loss gaincont sgo2 reportcont. gene characterizationrefac of common clusterProfiler utilsadded bedopsredo orfs on gmap cdsupdated deps to kutils 0.2-snapshotadded tx alignmentsfixed to work with latest bioc-devcont gsea wrappermoved utility cp functions into commonscosmeticsstarted gsea enrichment toolfinished basic results integrationported fc analysis to h3ha datamodernized chipseq utilitiesfixed partition nameadded bedtools to PATHfixed package loading for R3.3cosmeticsreadded csvkit path for madmaxmadmaxmadmaxuse abs.max for gene aggregation