Skip to content
Snippets Groups Projects
Select Git revision
  • corescf
  • dev_genic_counts
  • gsea_dev
  • madmax
  • master default protected
  • star_kotlin_stranded
  • v1.1
  • v11
  • v10
  • v9
  • v8
  • v7
  • v6
  • v5
  • v4
  • v3
  • v2
  • v1
  • belicova_mouse__20170519
  • moath_rnaseq__20170424
  • fam72d_transfection_seq__20170315
  • meyer_rnaseq__20170315
22 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.012Jan111098222Dec2120191815141311429Nov272321201615139727Oct262524191613121120Sep191815148654131Aug302328Jul26242120191830Jun29222120191513982131May2924231918169428Apr2724191024Mar2322151392122Dec9123Nov181420Oct18121116Sep15149626Aug244128Jul8765124Jun151432130May2625201917131211109428Apr2012864124Mar2117161582129Feb26252423854129Jan2726158765418Dec1611982112Nov963228Oct2322211918728Sep2221181716151187331Aug2524201930Jul2923211714133130Jun29242319161511109321May20191230Apr2928272316987131Mar2720181716131211109413Feb123228Jan272114619Dec181712118528Nov272624212014simplified explorer app creationfixed incorrect mart for enrichment reportingfinished tx diffex analysismoved session info from report into session dumpimproved kallisto helpersadded count matrix exportadded export of the basic design file updated with information on the cells' cell cycle phases; changed exported session file to a dot fileMerge remote-tracking branch 'origin/master'added export of combined STAR and kallisto dataset; changed setting from 5% to 1% of most divergent counts; cosmeticsincluded saturation plot based on simulated sequencing depthsfixed typo in index suffixMerge branch 'master' of git.mpi-cbg.de:bioinfo/ngs_toolsMerge remote-tracking branch 'origin/master'more robust cluster bioinfo sync for indicesfixed bug in the step where the list of SingleCellExperiment objects is createdbetter indexing parallelizationseparated genome indexing into own scriptMerge remote-tracking branch 'origin/master'started script to perform quality control of single cell RNAseq data. This is the first script of our new workflow, i.e. sc_workflow/Merge branch 'master' of git.mpi-cbg.de:bioinfo/ngs_toolsadded appifyadded platform independent symlinksstarted script to compare kallisto and star dataadded input argument '<cdna_file_name>', genome information, sample information and plot of the proportion of pseudoaligned readsrun_kallisto(): saved kallisto log files and passed information on the used cdna file to collect_kallisto_data.Radded output of pseudoalignments as sam and bam filesremoved _linuxrefined batch correction toolingmoved call of the collect_kallisto_data.R script to run_kallisto() in the dge_utils.sh scriptincluded function to build_kallisto_index() and included the call of collect_kallisto_data.R in the run_kallisto functionremoved the prerequisite to give basic_design.txt as inputincluded tpms_by_gene in kallisto_results.txt outputincluded command to create 'expression explorer' appincluded function to create 'expression explorer' app (i.e. dge_create_explorer_app)created script to analyse kallisto dataadded mapping with kallisto and kallisto data analysisadded path to kallistoMerge remote-tracking branch 'origin/master'created bash script to run the expression explorer app either via bash or as a 'proper' app when processed with appifyMerge remote-tracking branch 'origin/master'