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Created with Raphaël 2.2.04Dec29Nov272321201615139727Oct262524191613121120Sep191815148654131Aug302328Jul26242120191830Jun29222120191513982131May2924231918169428Apr2724191024Mar2322151392122Dec9123Nov181420Oct18121116Sep15149626Aug244128Jul8765124Jun151432130May2625201917131211109428Apr2012864124Mar2117161582129Feb26252423854129Jan2726158765418Dec1611982112Nov963228Oct2322211918728Sep2221181716151187331Aug2524201930Jul2923211714133130Jun29242319161511109321May20191230Apr2928272316987131Mar2720181716131211109413Feb123228Jan272114619Dec181712118528Nov272624212014read in sub_data option as logical parameterMerge remote-tracking branch 'origin/master'included the option to subset de_results.txt based on the individual contrastsadded workaround for network filesystem problemsMerge branch 'master' of git.mpi-cbg.de:bioinfo/ngs_toolsMerge branch 'pr_test' into 'master'added wordsMerge remote-tracking branch 'origin/master'corrected q-value scale for same limitscont domain enrichment reportstarted domain enrichment reportreworked tocfixed typo in report nameremoved pointless screenshotsadded more workflow referencesupdated docsreport refinementsmodernized used toolsmore consistent argument namingv7v7added common q-score color scale for enrichment plotsadjusted sessionInfo() output fileMerge remote-tracking branch 'origin/master'added output print of run configurations and sessionInfo()added support for chimpanzeev6v6removed duplicated helper functionsadjusted geom_text position of volcano plotsv5v5extend guess_mart to Chinese hamster (cchok1gshd_gene_ensembl)added DESeq2 option betaprior with default = TRUE; corrected volcano plot labelling; removed default of geneInfo optionuse tag for diffex_commons.R sourcingv4v4removed unused commentsoptimized thread optionsMerge branch 'master' of git.mpi-cbg.de:bioinfo/ngs_toolsremoved jitteringMerge remote-tracking branch 'origin/master'added bedtools2-2.25 and reset of joblist task name before running dge_bigwigremoved jl backward compatibility wrappersadded chimp genomefixed typoadded git to docker base imageproject -> PRJ_NAME