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Created with Raphaël 2.2.011Oct20Sep191815148654131Aug302328Jul26242120191830Jun29222120191513982131May2924231918169428Apr2724191024Mar2322151392122Dec9123Nov181420Oct18121116Sep15149626Aug244128Jul8765124Jun151432130May2625201917131211109428Apr2012864124Mar2117161582129Feb26252423854129Jan2726158765418Dec1611982112Nov963228Oct2322211918728Sep2221181716151187331Aug2524201930Jul2923211714133130Jun29242319161511109321May20191230Apr2928272316987131Mar2720181716131211109413Feb123228Jan272114619Dec181712118528Nov272624212014added option to check R & python versionv1v1diabled printing of failing pathway renderingsadded workaround for invalid pathway idssimplified level assignmentupdated datautils to v1.44added featureCountsfixed common bin pathadded moods and custom java to setupremoved error message (missing pathways) as it interfered with knitterremoved `/` when part of the contrast label; adjusted error message for missing pathway datachanged holger to brandl in furiosa pathsadded auto-discovery branch for BIOINFO_BIN_BASE on falcon1started impl of cp_enrichment for yeastadded igvviewer to tools setupmore consistent naming of columnsexpose used ensembl backend db as parameter; more strict input data validation.more robust heuristic to guess BIOBASE_BIN directoryupdated samtools to 1.5Merge remote-tracking branch 'origin/master'fixed missing arg in templateadded binary kallisto setupadded information on (min) GO levels to the enrResults data frameMerge branch 'master' of git.mpi-cbg.de:bioinfo/ngs_toolsupdated core_commons version.updated report of exported dataadded saving of ngs_tools' git commit versionMerge branch 'master' of git.mpi-cbg.de:bioinfo/ngs_toolsfixed count filteradjusted path to ngs_tools on clusterMerge branch 'master' of git.mpi-cbg.de:bioinfo/ngs_toolsadded outliers analysisupdated PCA with and without batch effect and updated to datautils/v1.42/R/ggplot_commons.Rstarted compilation of dup-radar reference data setsMerge remote-tracking branch 'origin/master'added dge_analyze_duplicates.shadded model dup-radar model parameter correlation plotfinished basic integration of dupradarcont duplicate analysisadded picard setuprun bc outside of STAR wrapper