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Created with Raphaël 2.2.01Jun31May2924231918169428Apr2724191024Mar2322151392122Dec9123Nov181420Oct18121116Sep15149626Aug244128Jul8765124Jun151432130May2625201917131211109428Apr2012864124Mar2117161582129Feb26252423854129Jan2726158765418Dec1611982112Nov963228Oct2322211918728Sep2221181716151187331Aug2524201930Jul2923211714133130Jun29242319161511109321May20191230Apr2928272316987131Mar2720181716131211109413Feb123228Jan272114619Dec181712118528Nov272624212014added helper script to convert counts to tpm and fpkmcont dexseq retention analysisstarted gene feature enrichment analysiscont custom hsap igenome buildincreased memory to build star indexadded custom hsap build; source core_utils in dge_utilsfixed stranding in analysisfixed: star tmp files are not removedfinished basic impl of dexseq protocolalso export directed hits table for enrichment analysisimproved enrichement reportMerge branch 'master' of git.mpi-cbg.de:bioinfo/ngs_toolsadded more sections to templatetemplate cosmeticsallow for symbolic link fastq references. more stringent pe checkfixed plotting issuebelicova_mouse_…belicova_mouse__20170519cosmeticsinc used ensembl version to mar2017enabled ihw; improved volcano plotsupdated docs and dependenciesremoved unused filesuse dotplot for enrichment visualzationadded deprecation warning when being used without design filebash cosmeticsuse kallisto for tx abundance estimationremoved unused templateadded helper for bigwig generation using deeptools bamCoverageupdated utilities for sorted overlap analysesupdated common dependenciesmore env checking in rna-seq workflow templateremoved plyr dependencymore consistent slice tooltip orderupdated todofixed missing slice model tablemoath_rnaseq__2…moath_rnaseq__20170424added gff sorting utilityused archive site for biomartreplaced public dropbox links with new URLsadded workaround for MT chromosomeadded more landing page infomore docs