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Similarity/Homology Assessment by Relating K-mers

Completly reimplmented Lipidxplorer, with adaptation layer to read lipidxplorer1 files

Backend APIs (Flask) exposing data from database in RESTful format

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Python Scripts to generate data in MongoDB after aggregation from source databases; update/modify data for the web app as well as the predictor; manipulate data for "Condensate Proteome Predictor"

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Implementation of 2D unet. Use as base for user projects.

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Complementary information to the Progenitors Processes Analysis (PPA) script described in the paper "Kalebic et al, Neocortical expansion due to increased proliferation of basal progenitors is linked to changes in their morphology".

A web service for calculating the Levenshtein distance between two sequences

Theory analysis and code for studying Drosophila wing disc eversion

Quantitative analysis of diacylglycerol signaling kinetics in single cells

Python package of the deTEL translation error detection pipeline from mass-spectrometry data

MotionTracking project to Analyze Hepatocyte Cages.

This repository is all about simulating flow driven pruning in biological flow networks.