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Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

MATLAB code for deconvolving snakes

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Theory analysis and code for studying Drosophila wing disc eversion

Official MOSAIC Group software repository.

Jenkins pipelines

this repository contains Fiji scripts associated with the paper : Stefan et al., Quantitative analysis of native lipid dynamics and lipid protein interactions in living cells

A MATLAB implementation of the split-Bregman algorithm for image segmentation

PPM client for diffusion on curved surfaces

This is a code-repository for the image-, sequencing and data-analysis performed for the manuscript: Integrated Molecular-Phenotypic Profiling Reveals Tuneable Modulators of Morphological Variation in Stembryos" authored by: Alba Villaronga Luque et al.

MATLAB implementation of image naturalization

Complementary information concerning the article: "The novel Rab5 effector FERRY links the early endosome with the translation machinery"