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Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.

A test repository for teaching

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

Project to quantify and measure orientation of network branches in regards to Ch iMap

Complementary information concerning the article "Mutations in the Drosophila splicing regulator Prp31 as a model for Retinitis pigmentosa 11"

Segmentation of the basal cell-matrix contact sites on laminin structure

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Analysis of ARE in liver tissue. with Julien Delpierre

Implementation of 2D unet. Use as base for user projects.

Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.

Plugin to fit and unwrap ellipsoid surfaces

Analysis of actomyosin dynamics at local and tissue scales in cultured Drosophila egg chambers. Ivana Viktorinová, Robert Haase, Tobias Pietzsch, Ian Henry and Pavel Tomancak

hidra fork, intended to exist until desy's hidra goes full open source on github or similar