Explore projects

patches to vfb-run to allow multiple xvfb processes on one machine

collections of hackyhour examples and documentation

Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation

resolution slope calculator for Lipid xplorer

Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.

Basic code to perform inPhase, a method to determine dilute and condensed phase concentrations of protein condensates.

Analysis of ARE in liver tissue. with Julien Delpierre

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

Simulation of virus transmission between cells

lipid lipid correlation network using pearson correlation + hierarchical clustering based on cosine sim drawing network using gml

Theory analysis and code for studying Drosophila wing disc eversion

3day Image analysis course given externally in 2020-12.

A collection of tools to process and manipulate high-throughput sequencing data

useful functionality for image-, data-analysis and classification of stembryos