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Scenery - Virtual Reality and Augmented Reality framework

gap closing pipeline based on gcpp

test IJ2 cancelable command

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

Implementation of the fast curvature filters for images.

Image-based pipeline for solving inhomogeneous reaction-diffusion PDEs in real-world porous geometries. Level-set method (multi-CPU) for reconstruction. Sparse grids (multi-GPU) for diffusion simulation. Parallel data structures from OpenFPM.

Sequencing analysis pipeline for our paper "Human assembloids recapitulate periportal liver tissue in vitro"

A MATLAB implementation of the split-Bregman algorithm for image segmentation

Python wrappers for LibAPR

Compartmentalized RNA catalysis in membrane-free coacervate protocells