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real-time in-situ visualization of distributed numerical simulations

pSSAlib: Stochastic chemical network and reaction-diffusion simulation

PPM client for diffusion on curved surfaces

PPM client for diffusion in complex spaces

PICNIC (Proteins Involved in CoNdensates In Cells) is machine learning-based model that predicts proteins involved in biomolecular condensates.

Particle Tracking C/Java Source Code

pCMALib: a parallel FORTRAN 90 library for CMA-ES

A web service for calculating the Levenshtein distance between two sequences

hidra fork, intended to exist until desy's hidra goes full open source on github or similar

Implementation of Gaussian Next Subvolume Method (GNSM), which generates trajectories for Gaussian Reaction Diffusion Master Equation (GRDME)

Geometric computation benchmarks with classic numerical schemes for comparison with Global Polynomial Level Set method.

Forthreads Library