Explore projects

Code repository for various misc plk scripts.

Variant Effect Predictor (VEP) for missense variants in clinically actionable genes (ACMG SF v2.0).

MotionTracking project to Analyze Hepatocyte Cages.

Bifunctional Monosaccharides Preferentially Localize to Nuclear Subcompartments

PDE inference from limited spatio-temporal data

Script for publication - Matrix topology guides collective cell migration in vivo

Analysis of ARE in liver tissue. with Julien Delpierre

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

Code accompanying "Inverse-Dirichlet Weighting Enables Reliable Training of Physics Informed Neural Networks", Maddu et al., 2021

private repo with testing jupyter notebooks

Python wrappers for LibAPR

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.