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This repository is all about simulating flow driven pruning in biological flow networks.
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This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.
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hyrdrodynamics methods for kirchhoff graphs
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Official MOSAIC Group software repository.
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Scenery - Virtual Reality and Augmented Reality framework
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Interaction Analysis Toolbox for MATLAB
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Region Competition algorithm implemented as an ITK filter (C++).
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A MATLAB implementation of the split-Bregman algorithm for image segmentation
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MATLAB Toolbox for cell-outline segmentation in phase-contrast images
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MATLAB code for deconvolving snakes
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MATLAB implementation of image naturalization
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Implementation of the fast curvature filters for images.
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Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.
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Particle Tracking C/Java Source Code
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MATLAB toolbox for particle tracking
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MSS trajectory analysis
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Brownian dynamics simulation of cross-linked filament bundles
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Simulation of virus transmission between cells