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Image analysis course (20h): Concepts and hands-on with Fiji and Ilastik.
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Structured Polynomial Noise Patterns cause instability of classic CARE denoisers and yield an active learning approach
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Material for an IJ macro course.
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3day Image analysis course given externally in 2020-12.
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scripts related to the publication
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Exploring cellpose (deep learning) for segmentation in 2D&3D. Including setup for GPU on cluster or workstation
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Quantitative analysis of diacylglycerol signaling kinetics in single cells
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Complementary information concerning the article: "A 3D system to model human pancreas development and its reference single cell transcriptome atlas reveal signaling pathways required for progenitor expansion"
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Implementation of 2D unet. Use as base for user projects.
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Slicing lc ms data into time ... slices, to run lipidxplorer on the slices
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