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private repo with testing jupyter notebooks

Python wrappers for LibAPR

This is a python implementation of the cycle coalescence algorithm as described by Modes et al, 2016.

Official MOSAIC Group software repository.

Scenery - Virtual Reality and Augmented Reality framework

Interaction Analysis Toolbox for MATLAB

Region Competition algorithm implemented as an ITK filter (C++).

A MATLAB implementation of the split-Bregman algorithm for image segmentation

MATLAB Toolbox for cell-outline segmentation in phase-contrast images

MATLAB code for deconvolving snakes

MATLAB implementation of image naturalization

Implementation of the fast curvature filters for images.

Particle filter tracking toolkit/framework for the popular free image processing software ImageJ.

Particle Tracking C/Java Source Code

MATLAB toolbox for particle tracking

MSS trajectory analysis

Brownian dynamics simulation of cross-linked filament bundles

Simulation of virus transmission between cells

Exact stochastic simulation of intracellular transport

pSSAlib: Stochastic chemical network and reaction-diffusion simulation