Explore projects

Supplementary Jupyter notebook to our article "Lgr5+ stem/progenitor cells reside at the apex of the embryonic hepatoblast pool"

This is a code-repository for the image-, sequencing and data-analysis performed for the manuscript: Integrated Molecular-Phenotypic Profiling Reveals Tuneable Modulators of Morphological Variation in Stembryos" authored by: Alba Villaronga Luque et al.

private repo with testing jupyter notebooks

Theory analysis and code for studying Drosophila wing disc eversion

Improving contrast in confocal data by degrading image with model of light scattering

This software package implements the identification of robust topological defects.

Repository of Code used in the Bachelor Thesis "Guanine crystal segmentation and classification imaged in the eye of zebrafish embryos"

hyrdrodynamics methods for kirchhoff graphs

This repository is all about simulating flow driven pruning in biological flow networks.

class definitions and methods for kirchhoff graphs

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

PDE inference from limited spatio-temporal data