Explore projects

Segmentation of the basal cell-matrix contact sites on laminin structure

Script for publication - Matrix topology guides collective cell migration in vivo

Little tiny model of Ath5-Ptf1a interactions in fate decisions in the embryonic zebrafish retina.

hyrdrodynamics methods for kirchhoff graphs

This repository is all about simulating flow driven pruning in biological flow networks.

class definitions and methods for kirchhoff graphs

Code used to prepare events plots for controls and morpholinos experiments for lineage analysis

Hexagonal spring network with pores are stretched. The resulting stress profile is analyzed. The aim is to verify the hypothesis that in the Zebrafish optic cup, ECM with more pores are under more stress than ECM with less pores.

PDE inference from limited spatio-temporal data

polishing pipelines

real-time in-situ visualization of distributed numerical simulations

Jenkins pipelines