Rewrite overlay with laplace transform to fit OO code.

prob_laplace.m

+%% Solve Fokker Planck equation
+T = Ternary_model(0, 'Gauss', [-1, 0.000025, 0.05, 0.4, 0.16, 0.2],...
+                  linspace(0.0, 400, 5000));
+T.t = 0:0.01:20;
+T.solve_tern_frap()
 %% Frank's solution to the transfer/rate problem via Laplace transform
 x0 = 2;
-% D_p = 0.85;
-% D_m = 0.15;
-D_m = g0(1)*(1-u0-e); % to make equal to ternary FRAP
-D_p = g0(end)*(1-u0);
+D_m = T.g0(1)*(1-T.u0-T.e); % to make equal to ternary FRAP
+D_p = T.g0(end)*(1-T.u0);
 ga = 1/9;
-
+%%
 p_out = @(D_p, D_m, ga, x0, x, t) 1./(2*sqrt(D_p*pi*t))*...
             (exp(-(x+x0).^2./(4*D_p*t))*(ga*sqrt(D_p)-sqrt(D_m))./...
             (ga*sqrt(D_p)+sqrt(D_m))+exp(-(x-x0).^2./(4*D_p*t)));
@@ -13,15 +16,13 @@ p_in = @(D_p, D_m, ga, x0, x, t) 1./(sqrt(pi*t)*(sqrt(D_m)+ga*sqrt(D_p)))*...
             exp(-(x-x0*sqrt(D_m/D_p)).^2/(4*D_m*t));
 x_left = linspace(-4, 0, 1000);
 x_right = linspace(0, 4, 1000);
-
 %% Plot with full ternary model
-
-for i = 1:200
+for i = 1:200   
     figure(2); hold on; cla;
     j = i+2;
     plot(x_left, p_in(D_p, D_m, ga, x0, x_left, j/100));
     plot(x_right, p_out(D_p, D_m, ga, x0, x_right, j/100));
-    plot(x+a, sol(i, :), 'LineWidth', 2);
+    plot(T.x+T.a, T.sol(i, :), 'LineWidth', 2);
     axis([-1, 3, 0, 0.7]);
     shg; pause();
 end