Commits · 01485754dcf4c1a4de662556716785f4eda5b876 · hubatsch / Frap Theory

Aug 09, 2021

Update plots for revisions at eLife. · 01485754

Lars Hubatsch authored 3 years ago

New plot for PLYS ATP spatial recovery.
New plot for boundary condition PGL
New plot for valley in cost function
New plot for relative partition coefficient

01485754

Mar 30, 2021
- Delete remnants of old mean cross jump length. · 3b56ab0f
  Lars Hubatsch authored 4 years ago
  
  3b56ab0f
- run_jump_length now has output values. Mean cross jump length works. · 53c38f18
  Lars Hubatsch authored 4 years ago
  
  53c38f18
Mar 23, 2021
- Test jump length with tanh mobility. Slightly off. · b8721728
  Lars Hubatsch authored 4 years ago
  
  b8721728
Mar 19, 2021
- Add lb parameter in call of int_prob. · 63b319b5
  Lars Hubatsch authored 4 years ago
  
  63b319b5
- New mobility possible: D=D0*(1-a*phi). Not tested. · 60c03380
  Lars Hubatsch authored 4 years ago
  
  60c03380
Mar 14, 2021
- Merge remote-tracking branch 'origin/master' · 2056a3df
  Lars Hubatsch authored 4 years ago
  
  2056a3df
- Introduce constant flux case with Dirichlet BC. Works in principle. · ae8fe0e3
  Lars Hubatsch authored 4 years ago
  
  ae8fe0e3
- Merge branch 'master' of https://gitlab.pks.mpg.de/mesoscopic-physics-of-life/frap_theory · 30ed0fe0
  Lars Hubatsch authored 4 years ago
  
  30ed0fe0
- Trying to combine lb with corrected i->i, o->o. · 1eb13e11
  Lars Hubatsch authored 4 years ago
  
  1eb13e11
- Cosmetics and renmaing?? · ba6b4fcd
  Lars Hubatsch authored 4 years ago
  
  ba6b4fcd
- Cosmetic changes. · 5ed22c24
  Lars Hubatsch authored 4 years ago
  
  5ed22c24
Mar 09, 2021
- Merge remote-tracking branch 'origin/master' · 5f916477
  Lars Hubatsch authored 4 years ago
  
  5f916477
- Figures as per biorxiv submission. · b4bb2a7f
  Lars Hubatsch authored 4 years ago
  
  b4bb2a7f
Feb 22, 2021
- Update README.md · b819c42a
  Lars Hubatsch authored 4 years ago
  
  b819c42a
Feb 20, 2021
- Add supplementary plot for D~P and D~P^2. · 24868c99
  Lars Hubatsch authored 4 years ago
  
  24868c99
Feb 14, 2021
- Update plots for P vs D_out PGL-3. · 094e0c47
  Lars Hubatsch authored 4 years ago
  
  094e0c47
Feb 13, 2021
- Update figure: influence of coverslip and neighbours. · abcb1fcd
  Lars Hubatsch authored 4 years ago
  
  abcb1fcd
Feb 10, 2021
- Make mesh more precise close to zero to have good agreement with Stefano. · 1f13d183
  Lars Hubatsch authored 4 years ago
  
  1f13d183
- Reducing interval for jump length calcs to save time. · 43e91d00
  Lars Hubatsch authored 4 years ago
  
  43e91d00
Feb 08, 2021
- Ignoring interval around boundary works in principle (lb). · 9df78eed
  Lars Hubatsch authored 4 years ago
  
  9df78eed
- Implement skipping immediate boundary region for boundary crossing case. · f76b43f1
  Lars Hubatsch authored 4 years ago
  
  f76b43f1
Feb 07, 2021
- Adopt multi drop FEM for better accuracy, fix bug in z distance. · 5b4be0c3
  Lars Hubatsch authored 4 years ago
  
  5b4be0c3
- nansum for probs in prob_laplace. · 07a05989
  Lars Hubatsch authored 4 years ago
  
  07a05989
- Multi drop meshes updated for compromise between accuracy and runtime. · e2b75a55
  Lars Hubatsch authored 4 years ago
  
  e2b75a55
Feb 05, 2021
- Updating multi drop meshes to better accuracy. · c1aa0ef4
  Lars Hubatsch authored 4 years ago
  
  c1aa0ef4
Feb 04, 2021
- Jump length distros seem to work for boundaries at 3, 5, 7. · e965723e
  Lars Hubatsch authored 4 years ago
  
  e965723e
- Fix two bugs in calculation of gamma0. · 7f3f984d
  Lars Hubatsch authored 4 years ago
  
  7f3f984d
- .gitignore · 41531642
  Lars Hubatsch authored 4 years ago
  
  41531642
- Experiment with moving boundary entropy production. Not finished. · 3baadc1d
  Lars Hubatsch authored 4 years ago
  
  3baadc1d
- Cosmetics. · 094a0b05
  Lars Hubatsch authored 4 years ago
  
  094a0b05
- Plot Anatol's PGL-3 partitioning data on top of mine. · 085b1be9
  Lars Hubatsch authored 4 years ago
  
  085b1be9
- Try jump length distro for D=const.=0.5. Doesn't work. Old case not working. · b5d0290d
  Lars Hubatsch authored 4 years ago
  
  b5d0290d
- Introduce new gamma0 parameters to prob_laplace. Not tested. · 3348fbab
  Lars Hubatsch authored 4 years ago
  
  3348fbab
- Better meshing around x0 for Gaussian initial condition. · 20bd2dbb
  Lars Hubatsch authored 4 years ago
  
  20bd2dbb
- Introduce possibility for constant D across entire domain. Not tested. · 0e5cf66e
  Lars Hubatsch authored 4 years ago
  
  0e5cf66e
Feb 03, 2021
- Loop for different outputs to Matlab. Toggle eps for long or short profs. · 17472f4a
  Lars Hubatsch authored 4 years ago
  
  17472f4a
Jan 30, 2021
- Running finer FEM sims for coverslip with corrected droplet position 0.25. · ba22ddc2
  Lars Hubatsch authored 4 years ago
  
  ba22ddc2
- Correct droplet position and mesh resolution in .geo files. · 88b987ca
  Lars Hubatsch authored 4 years ago
  
  88b987ca
Jan 24, 2021
- Minor. · dc58ac50
  Lars Hubatsch authored 4 years ago
  
  dc58ac50