Commits · a2137b7267bc5558571275b95bad51cabb7ae5cf · hubatsch / Frap Theory · GitLab

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Oct 14, 2021
- Introduce params_n: now generalized input for more than one species via · a2137b72
  Lars Hubatsch authored 3 years ago
  
  structure. Reaction diffusion - here we come.
  a2137b72
Oct 13, 2021
- Update .gitignore. · 574a5c31
  Lars Hubatsch authored 3 years ago
  
  574a5c31
- Fokker Planck for P~25, eps=0.02. · 927b0c42
  Lars Hubatsch authored 3 years ago
  
  927b0c42
Sep 14, 2021
- Ellipsoid .geo file for EMBL application. · 162a3ad1
  Lars Hubatsch authored 3 years ago
  
  162a3ad1
- Plots for EMBL application. · 076315b6
  Lars Hubatsch authored 3 years ago
  
  076315b6
- Introduce half FRAP geometry for initial condition. · 36128899
  Lars Hubatsch authored 3 years ago
  
  36128899
- eLife Resubmission. · 149b4c79
  Lars Hubatsch authored 3 years ago
  
  149b4c79
- Changed D of product. · 734a75e5
  Lars Hubatsch authored 3 years ago
  
  734a75e5
- Change substrate initial condition. · f6d018b8
  Lars Hubatsch authored 3 years ago
  
  f6d018b8
Aug 31, 2021
- Two different mobilities and space-dependent reaction rate in · 63bb7686
  Lars Hubatsch authored 3 years ago
  
  Hammerhead/Ribozyme system.
  63bb7686
- Change substrate initial condition. · 59a93e43
  Lars Hubatsch authored 3 years ago
  
  59a93e43
- Legend and plot for scaffold-substrate system (Hammerhead/Ribozyme). · 07426b6b
  Lars Hubatsch authored 3 years ago
  
  07426b6b
Aug 27, 2021
- Simulate droplet diffusion in ellipsoidal cells-shaped volume. · f14f4d45
  Lars Hubatsch authored 3 years ago
  
  f14f4d45
Aug 10, 2021
- plot_sim can now work with two species. · fb9588a9
  Lars Hubatsch authored 3 years ago
  
  fb9588a9
- Start working on Hammerhead/Ribozyme reaction. Seems to work in principle. · b047d291
  Lars Hubatsch authored 3 years ago
  
  b047d291
Aug 09, 2021
- Starting work on dip in mobility. Not finished. · 6680ed59
  Lars Hubatsch authored 3 years ago
  
  6680ed59
- Merge branch 'master' of https://gitlab.pks.mpg.de/mesoscopic-physics-of-life/frap_theory · a514b114
  Lars Hubatsch authored 3 years ago
  
  a514b114
- Probably changed D for constant D case to D=1?? · 98f21d2d
  Lars Hubatsch authored 3 years ago
  
  98f21d2d
- Merge remote-tracking branch 'origin/master' · f0dbd45d
  Lars Hubatsch authored 3 years ago
  
  f0dbd45d
- Update plots for revisions at eLife. · 01485754
  Lars Hubatsch authored 3 years ago
  
  New plot for PLYS ATP spatial recovery. New plot for boundary condition PGL New plot for valley in cost function New plot for relative partition coefficient
  01485754
Apr 01, 2021
- Equal D across domain still seems to work, Compared visually in Jupyter. · 3d827599
  Lars Hubatsch authored 3 years ago
  
  3d827599
Mar 30, 2021
- Delete remnants of old mean cross jump length. · 3b56ab0f
  Lars Hubatsch authored 3 years ago
  
  3b56ab0f
- run_jump_length now has output values. Mean cross jump length works. · 53c38f18
  Lars Hubatsch authored 3 years ago
  
  53c38f18
Mar 23, 2021
- Test jump length with tanh mobility. Slightly off. · b8721728
  Lars Hubatsch authored 3 years ago
  
  b8721728
Mar 19, 2021
- Add lb parameter in call of int_prob. · 63b319b5
  Lars Hubatsch authored 4 years ago
  
  63b319b5
- New mobility possible: D=D0*(1-a*phi). Not tested. · 60c03380
  Lars Hubatsch authored 4 years ago
  
  60c03380
Mar 14, 2021
- Merge remote-tracking branch 'origin/master' · 2056a3df
  Lars Hubatsch authored 4 years ago
  
  2056a3df
- Introduce constant flux case with Dirichlet BC. Works in principle. · ae8fe0e3
  Lars Hubatsch authored 4 years ago
  
  ae8fe0e3
- Merge branch 'master' of https://gitlab.pks.mpg.de/mesoscopic-physics-of-life/frap_theory · 30ed0fe0
  Lars Hubatsch authored 4 years ago
  
  30ed0fe0
- Trying to combine lb with corrected i->i, o->o. · 1eb13e11
  Lars Hubatsch authored 4 years ago
  
  1eb13e11
- Cosmetics and renmaing?? · ba6b4fcd
  Lars Hubatsch authored 4 years ago
  
  ba6b4fcd
- Cosmetic changes. · 5ed22c24
  Lars Hubatsch authored 4 years ago
  
  5ed22c24
Mar 09, 2021
- Merge remote-tracking branch 'origin/master' · 5f916477
  Lars Hubatsch authored 4 years ago
  
  5f916477
- Figures as per biorxiv submission. · b4bb2a7f
  Lars Hubatsch authored 4 years ago
  
  b4bb2a7f
Feb 22, 2021
- Update README.md · b819c42a
  Lars Hubatsch authored 4 years ago
  
  b819c42a
Feb 20, 2021
- Add supplementary plot for D~P and D~P^2. · 24868c99
  Lars Hubatsch authored 4 years ago
  
  24868c99
Feb 14, 2021
- Update plots for P vs D_out PGL-3. · 094e0c47
  Lars Hubatsch authored 4 years ago
  
  094e0c47
Feb 13, 2021
- Update figure: influence of coverslip and neighbours. · abcb1fcd
  Lars Hubatsch authored 4 years ago
  
  abcb1fcd
Feb 10, 2021
- Make mesh more precise close to zero to have good agreement with Stefano. · 1f13d183
  Lars Hubatsch authored 4 years ago
  
  1f13d183
- Reducing interval for jump length calcs to save time. · 43e91d00
  Lars Hubatsch authored 4 years ago
  
  43e91d00