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  • 3D-two-matrices
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Created with Raphaël 2.2.08Jul764230Jun292523151325May20829Apr282721151187654131Mar302928252423222117161514832122Feb212015Jan24Nov26Oct2019141314Sep31Aug271091Apr30Mar231914922Feb201413108754330Jan24191816158Dec227Nov18171611943229Oct2623222120191413729Sep2825242221181716159875331Aug302726252418121065431Jul30292221201918171614131279Jun22May2015121110328Apr272220161412118762127Mar26252423201917151412109625Feb241716141312111031Jan2015146330Dec1918328Nov2726251918Tridiagonal matrix makes huge difference!!Introduce a second domain as an exact copy of the first for now.Starting work on connecting two matrices instead of a single one.Finer spacing.Update plotting.Comparison works well inside, for every other time point. Julia stillAdded file with examples of function calls updated to latest version of eff_dropReducing-input-…Reducing-input-parametersDescription arguments solve_D + layoutFRAP and Matlab initial conditions now unified in "FRAP"Getting rid of parameter "B" boundary (Neumann or Experimental). Now defined internally based on IC.Changed experimenta initial condition: now vector ["Exp", u0E, BE, tE]Changing Analytical initial condition: now vector ["analytical", x0, RA, Δx]. In this case need to provide right boundary of domain (RA) and delta_x, since adaptive grid does not guarantee that x0 falls within the domain.Changing FRAP initial condition: now vector ["FRAP", c_out]Getting rid of "AG" input condition (and thus of delta_x and delta_t), now adapting by default. Working with FRAP initial conditions.Getting rid of L, R parameters, corrected adaptive grid so that both alpha_in and alpha_out are 1Revert "Attempt at making spacing exponential inside and outside. Runs but gives"Attempt at making spacing exponential inside and outside. Runs but givesMatlab/Julia comparison works roughly, but too slow. new eff_Drop implementation (x and t domain) for big D_outMerge branch 'master' of https://git.mpi-cbg.de/hubatsch/frap_theorynew eff_Drop implementation (x and t domain) for big D_outTime constraint on Matlab solution commented out. Comment out FRAP radiusCompare different parameter sets visually with Matlab. Not working.corrected condition D_o<1u0 corrected for multiple parameter fitUpdated eff_drop for multiple parameter fit. Next: adapt grid outside to D_outStarted changing eff_Drop for multiple parameter fit.Eff_drop working with InterfaceTryWorking with InterfaceTry.jl. It was not k, but the adaptive time stepping giving stability for D>1. For now easy fix.Troubleshooting…Troubleshooting-oscillationsFix (?) indexing issue in time.Change timing to see system evolution.Change of parameters. Write solutions to file.Merge remote-tracking branch 'origin/Troubleshooting-oscillations' into Troubleshooting-oscillationsCosmetics.Adding plots for Dresden application (chemical reaction recovery).With k not working in InterfaceTry. NEXT: start fixing from line 369Not breaking for half-times.eff drop adating delta_x for D,1, adapting delta_D to N=51, alpha=1 for D>=1.Minor fix on adaptive delta_t.u_in_eq corrected based on geometry. Still not perfectly matching.